RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 SCRT2Q9NQ03 307 aa10.03□□□□□ -0.8
LDLR-213ENST00000560502 DYNC1H1Q14204 4646 aaKnown RBP10.03□□□□□ -0.8
LDLR-213ENST00000560502 IGHV1OR15-1A0A075B7D0 117 aa10.02□□□□□ -0.81
LDLR-213ENST00000560502 A0A1B0GVY2 172 aa10.02□□□□□ -0.81
LDLR-213ENST00000560502 GRIFINA4D1Z8 144 aa10.02□□□□□ -0.81
LDLR-213ENST00000560502 DMRTA1Q5VZB9 504 aa10.02□□□□□ -0.81
LDLR-213ENST00000560502 SMIM15Q7Z3B0 74 aa10.02□□□□□ -0.81
LDLR-213ENST00000560502 CSNK1G2-AS1Q8NCQ2 148 aa10.02□□□□□ -0.81
LDLR-213ENST00000560502 C1QTNF4Q9BXJ3 329 aa10.02□□□□□ -0.81
LDLR-213ENST00000560502 RYR1P21817 5038 aa10.01□□□□□ -0.81
LDLR-213ENST00000560502 TRAV10A0A0B4J240 114 aa10.01□□□□□ -0.81
LDLR-213ENST00000560502 C5orf52A6NGY3 159 aa10.01□□□□□ -0.81
LDLR-213ENST00000560502 CRXO43186 299 aaPredicted RBP10.01□□□□□ -0.81
LDLR-213ENST00000560502 NXPH4O95158 308 aa10.01□□□□□ -0.81
LDLR-213ENST00000560502 KIR3DS1Q14943 382 aa10.01□□□□□ -0.81
LDLR-213ENST00000560502 OR10J3Q5JRS4 329 aa10.01□□□□□ -0.81
LDLR-213ENST00000560502 LINC00336Q6ZUF6 198 aa10.01□□□□□ -0.81
LDLR-213ENST00000560502 TMEM191AQ9H0A3 160 aa10.01□□□□□ -0.81
LDLR-213ENST00000560502 MUC4Q99102 2169 aa10□□□□□ -0.81
LDLR-213ENST00000560502 TRAV12-2A0A075B6T6 113 aa10□□□□□ -0.81
LDLR-213ENST00000560502 H3BVH4 76 aa10□□□□□ -0.81
LDLR-213ENST00000560502 NTF3P20783 257 aa10□□□□□ -0.81
LDLR-213ENST00000560502 Q0VG73 95 aa10□□□□□ -0.81
LDLR-213ENST00000560502 SLAQ13239 276 aa10□□□□□ -0.81
LDLR-213ENST00000560502 TWIST1Q15672 202 aa10□□□□□ -0.81
LDLR-213ENST00000560502 MUC21Q5SSG8 566 aa10□□□□□ -0.81
LDLR-213ENST00000560502 SPANXN1Q5VSR9 72 aa10□□□□□ -0.81
LDLR-213ENST00000560502 TP53TG3Q9ULZ0 132 aa10□□□□□ -0.81
LDLR-213ENST00000560502 RNASE3P12724 160 aaKnown RBP9.99□□□□□ -0.81
LDLR-213ENST00000560502 NDUFA6P56556 154 aa9.99□□□□□ -0.81
LDLR-213ENST00000560502 PIK3CD-AS1Q5SR53 167 aa9.99□□□□□ -0.81
LDLR-213ENST00000560502 Q6ZQT7 251 aa9.99□□□□□ -0.81
LDLR-213ENST00000560502 C9orf85Q96MD7 179 aa9.99□□□□□ -0.81
LDLR-213ENST00000560502 CELA1Q9UNI1 258 aa9.99□□□□□ -0.81
LDLR-213ENST00000560502 PHLDA3Q9Y5J5 127 aa9.99□□□□□ -0.81
LDLR-213ENST00000560502 IGHV3-16A0A0C4DH30 117 aa9.98□□□□□ -0.81
LDLR-213ENST00000560502 LOC105371267A0A1B0GV96 52 aa9.98□□□□□ -0.81
LDLR-213ENST00000560502 PPBPP02775 128 aa9.98□□□□□ -0.81
LDLR-213ENST00000560502 HOXA5P20719 270 aa9.98□□□□□ -0.81
LDLR-213ENST00000560502 C12orf74Q32Q52 190 aa9.98□□□□□ -0.81
LDLR-213ENST00000560502 FAM104BQ5XKR9 115 aa9.98□□□□□ -0.81
LDLR-213ENST00000560502 SYT8Q8NBV8 401 aa9.98□□□□□ -0.81
LDLR-213ENST00000560502 OR10AG1Q8NH19 301 aa9.98□□□□□ -0.81
LDLR-213ENST00000560502 PTH2Q96A98 100 aa9.98□□□□□ -0.81
LDLR-213ENST00000560502 PKD1P98161 4303 aa9.97□□□□□ -0.81
LDLR-213ENST00000560502 SRIP30626 198 aa9.97□□□□□ -0.81
LDLR-213ENST00000560502 SNRPEP62304 92 aaKnown RBP9.97□□□□□ -0.81
LDLR-213ENST00000560502 ZNF415Q09FC8 603 aa9.97□□□□□ -0.81
LDLR-213ENST00000560502 AP1S3Q96PC3 154 aa9.97□□□□□ -0.81
LDLR-213ENST00000560502 ALKBH7Q9BT30 221 aaPredicted RBP9.97□□□□□ -0.81
LDLR-213ENST00000560502 NDUFAF3Q9BU61 184 aa9.97□□□□□ -0.81
LDLR-213ENST00000560502 LAMTOR2Q9Y2Q5 125 aa9.97□□□□□ -0.81
LDLR-213ENST00000560502 CBY3A6NI87 242 aa9.96□□□□□ -0.82
LDLR-213ENST00000560502 RTL8CO15255 209 aa9.96□□□□□ -0.82
LDLR-213ENST00000560502 GNRH2O43555 120 aa9.96□□□□□ -0.82
LDLR-213ENST00000560502 FXYD7P58549 80 aa9.96□□□□□ -0.82
LDLR-213ENST00000560502 POM121L12Q8N7R1 296 aa9.96□□□□□ -0.82
LDLR-213ENST00000560502 GOLT1BQ9Y3E0 138 aa9.96□□□□□ -0.82
LDLR-213ENST00000560502 DEFB131BA0A096LNP1 70 aa9.95□□□□□ -0.82
LDLR-213ENST00000560502 ESDP10768 282 aa9.95□□□□□ -0.82
LDLR-213ENST00000560502 ORMDL3Q8N138 153 aa9.95□□□□□ -0.82
LDLR-213ENST00000560502 P0DMU3 169 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 FAM231AP0DMU4 169 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 FAM231CP0DMU5 169 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 KIAA1644Q3SXP7 199 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 C18orf32Q8TCD1 76 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 MRAP2Q96G30 205 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 PACRGQ96M98 296 aaPredicted RBP9.94□□□□□ -0.82
LDLR-213ENST00000560502 LINC01587Q99440 93 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 SPXQ9BT56 116 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 TMEM208Q9BTX3 173 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 DPH3P1Q9H4G8 78 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 XCL2Q9UBD3 114 aa9.94□□□□□ -0.82
LDLR-213ENST00000560502 ABCA13Q86UQ4 5058 aa9.93□□□□□ -0.82
LDLR-213ENST00000560502 M0R381 172 aa9.93□□□□□ -0.82
LDLR-213ENST00000560502 S100A2P29034 98 aa9.93□□□□□ -0.82
LDLR-213ENST00000560502 BAGE3Q86Y29 109 aa9.93□□□□□ -0.82
LDLR-213ENST00000560502 AMN1Q8IY45 258 aa9.93□□□□□ -0.82
LDLR-213ENST00000560502 HIST3H2BBQ8N257 126 aa9.93□□□□□ -0.82
LDLR-213ENST00000560502 MSRB1Q9NZV6 116 aa9.93□□□□□ -0.82
LDLR-213ENST00000560502 TIMM8BQ9Y5J9 83 aaPredicted RBP9.93□□□□□ -0.82
LDLR-213ENST00000560502 MUC21A0A0G2JKD1 596 aa9.92□□□□□ -0.82
LDLR-213ENST00000560502 MUC21A0A140T8X8 626 aa9.92□□□□□ -0.82
LDLR-213ENST00000560502 PRSS29PA6NIE9 313 aa9.92□□□□□ -0.82
LDLR-213ENST00000560502 PPP1R17O96001 155 aa9.92□□□□□ -0.82
LDLR-213ENST00000560502 RAB4AP20338 218 aa9.92□□□□□ -0.82
LDLR-213ENST00000560502 LGALS9BQ3B8N2 356 aa9.92□□□□□ -0.82
LDLR-213ENST00000560502 MRPL51Q4U2R6 128 aaKnown RBP9.92□□□□□ -0.82
LDLR-213ENST00000560502 ZNF705AQ6ZN79 300 aaPredicted RBP9.92□□□□□ -0.82
LDLR-213ENST00000560502 RNF185Q96GF1 192 aa9.92□□□□□ -0.82
LDLR-213ENST00000560502 GSN-AS1Q9NRJ2 163 aa9.92□□□□□ -0.82
LDLR-213ENST00000560502 NACAE9PAV3 2078 aa9.91□□□□□ -0.82
LDLR-213ENST00000560502 M0R2P5 195 aa9.91□□□□□ -0.82
LDLR-213ENST00000560502 SMIM17P0DL12 118 aa9.91□□□□□ -0.82
LDLR-213ENST00000560502 EVI2AP22794 236 aa9.91□□□□□ -0.82
LDLR-213ENST00000560502 CKS2P33552 79 aa9.91□□□□□ -0.82
LDLR-213ENST00000560502 C1orf158Q8N1D5 194 aa9.91□□□□□ -0.82
LDLR-213ENST00000560502 TMEM263Q8WUH6 116 aaKnown RBP9.91□□□□□ -0.82
LDLR-213ENST00000560502 CHCHD1Q96BP2 118 aaKnown RBP9.91□□□□□ -0.82
LDLR-213ENST00000560502 PRELID3AQ96N28 172 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 189.8 ms