RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ISOC2Q96AB3 205 aa12.13□□□□□ -0.47
SHMT2-225ENST00000556798 K7EQD1 137 aa12.12□□□□□ -0.47
SHMT2-225ENST00000556798 RHODO00212 210 aa12.12□□□□□ -0.47
SHMT2-225ENST00000556798 CIDEAO60543 219 aa12.12□□□□□ -0.47
SHMT2-225ENST00000556798 CRYGDP07320 174 aa12.12□□□□□ -0.47
SHMT2-225ENST00000556798 GTSF1Q8WW33 167 aa12.12□□□□□ -0.47
SHMT2-225ENST00000556798 KMT2AQ03164 3969 aa12.11□□□□□ -0.47
SHMT2-225ENST00000556798 TRBV6-4A0A1B0GX49 114 aa12.11□□□□□ -0.47
SHMT2-225ENST00000556798 A0A1W2PPQ1 181 aa12.11□□□□□ -0.47
SHMT2-225ENST00000556798 CTRLP40313 264 aa12.11□□□□□ -0.47
SHMT2-225ENST00000556798 RHOHQ15669 191 aa12.11□□□□□ -0.47
SHMT2-225ENST00000556798 OSTCQ9NRP0 149 aa12.11□□□□□ -0.47
SHMT2-225ENST00000556798 MSRB1Q9NZV6 116 aa12.11□□□□□ -0.47
SHMT2-225ENST00000556798 LINC00588Q9Y4M8 146 aa12.11□□□□□ -0.47
SHMT2-225ENST00000556798 DNAH6Q9C0G6 4158 aa12.11□□□□□ -0.47
SHMT2-225ENST00000556798 F2Z2F3 143 aa12.1□□□□□ -0.47
SHMT2-225ENST00000556798 SRIP30626 198 aa12.1□□□□□ -0.47
SHMT2-225ENST00000556798 CCL18P55774 89 aa12.1□□□□□ -0.47
SHMT2-225ENST00000556798 CACNG7P62955 275 aa12.1□□□□□ -0.47
SHMT2-225ENST00000556798 MRPL23Q16540 153 aaKnown RBP12.1□□□□□ -0.47
SHMT2-225ENST00000556798 ESRGQ1W209 222 aa12.1□□□□□ -0.47
SHMT2-225ENST00000556798 RNF212Q495C1 297 aa12.1□□□□□ -0.47
SHMT2-225ENST00000556798 C14orf178Q8N769 122 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-225ENST00000556798 PRADC1Q9BSG0 188 aa12.1□□□□□ -0.47
SHMT2-225ENST00000556798 A8MWL6 223 aa12.09□□□□□ -0.47
SHMT2-225ENST00000556798 CT83Q5H943 113 aa12.09□□□□□ -0.47
SHMT2-225ENST00000556798 COMMD7Q86VX2 200 aa12.09□□□□□ -0.47
SHMT2-225ENST00000556798 C15orf54Q8N8G6 183 aa12.09□□□□□ -0.47
SHMT2-225ENST00000556798 AP1S3Q96PC3 154 aa12.09□□□□□ -0.47
SHMT2-225ENST00000556798 V9GYV3 84 aa12.09□□□□□ -0.47
SHMT2-225ENST00000556798 ZNF56Q15929 161 aa12.08□□□□□ -0.48
SHMT2-225ENST00000556798 OR10G8Q8NGN5 311 aa12.08□□□□□ -0.48
SHMT2-225ENST00000556798 PGLYRP4Q96LB8 373 aa12.08□□□□□ -0.48
SHMT2-225ENST00000556798 Q9UF83 564 aa12.08□□□□□ -0.48
SHMT2-225ENST00000556798 IGLV2-18A0A075B6J9 118 aa12.07□□□□□ -0.48
SHMT2-225ENST00000556798 NTF3P20783 257 aa12.07□□□□□ -0.48
SHMT2-225ENST00000556798 NEGR1Q7Z3B1 354 aa12.07□□□□□ -0.48
SHMT2-225ENST00000556798 TSKUQ8WUA8 353 aa12.07□□□□□ -0.48
SHMT2-225ENST00000556798 SMIM17P0DL12 118 aa12.06□□□□□ -0.48
SHMT2-225ENST00000556798 TWIST1Q15672 202 aa12.06□□□□□ -0.48
SHMT2-225ENST00000556798 UQCC3Q6UW78 93 aa12.06□□□□□ -0.48
SHMT2-225ENST00000556798 CNFNQ9BYD5 112 aa12.06□□□□□ -0.48
SHMT2-225ENST00000556798 KIF25-AS1Q9Y6Z4 181 aa12.06□□□□□ -0.48
SHMT2-225ENST00000556798 GAGE12JA6NER3 117 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 HIGD1CA8MV81 97 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 F5H697 171 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 MGPP08493 103 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 EVI2AP22794 236 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 GAGE1Q13065 139 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 GAGE4Q13068 117 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 GAGE5Q13069 117 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 GAGE13Q4V321 117 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 LYPD5Q6UWN5 251 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 ZNRF2Q8NHG8 242 aa12.05□□□□□ -0.48
SHMT2-225ENST00000556798 MRPS16Q9Y3D3 137 aaKnown RBP12.05□□□□□ -0.48
SHMT2-225ENST00000556798 TRGC1P0CF51 173 aa12.04□□□□□ -0.48
SHMT2-225ENST00000556798 ADCYAP1P18509 176 aa12.04□□□□□ -0.48
SHMT2-225ENST00000556798 LINC00315P59091 139 aa12.04□□□□□ -0.48
SHMT2-225ENST00000556798 RAB4BP61018 213 aa12.04□□□□□ -0.48
SHMT2-225ENST00000556798 WDR73Q6P4I2 378 aa12.04□□□□□ -0.48
SHMT2-225ENST00000556798 GFRA4Q9GZZ7 299 aa12.04□□□□□ -0.48
SHMT2-225ENST00000556798 LINC00862A6NCI5 91 aa12.03□□□□□ -0.48
SHMT2-225ENST00000556798 M0R2N4 97 aa12.03□□□□□ -0.48
SHMT2-225ENST00000556798 LINC00694P0DN24 101 aa12.03□□□□□ -0.48
SHMT2-225ENST00000556798 FOXA3P55318 350 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-225ENST00000556798 FAM3BP58499 235 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-225ENST00000556798 TMEM218A2RU14 115 aa12.02□□□□□ -0.49
SHMT2-225ENST00000556798 BORCS7Q96B45 105 aa12.02□□□□□ -0.49
SHMT2-225ENST00000556798 FAM231BA6NCW3 169 aa12.01□□□□□ -0.49
SHMT2-225ENST00000556798 F8W036 122 aa12.01□□□□□ -0.49
SHMT2-225ENST00000556798 PNRC1Q12796 327 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-225ENST00000556798 SH2D6Q7Z4S9 175 aa12.01□□□□□ -0.49
SHMT2-225ENST00000556798 NUP35Q8NFH5 326 aa12.01□□□□□ -0.49
SHMT2-225ENST00000556798 ATP6V0E2Q8NHE4 81 aa12.01□□□□□ -0.49
SHMT2-225ENST00000556798 UPK3BQ9BT76 320 aa12.01□□□□□ -0.49
SHMT2-225ENST00000556798 DPH3P1Q9H4G8 78 aa12.01□□□□□ -0.49
SHMT2-225ENST00000556798 SUMO4Q6EEV6 95 aa12□□□□□ -0.49
SHMT2-225ENST00000556798 Q9H8V8 135 aa12□□□□□ -0.49
SHMT2-225ENST00000556798 NAT8BQ9UHF3 227 aa12□□□□□ -0.49
SHMT2-225ENST00000556798 TRBV10-1A0A0K0K1A3 114 aa11.99□□□□□ -0.49
SHMT2-225ENST00000556798 A0A1B0GUT8 65 aa11.99□□□□□ -0.49
SHMT2-225ENST00000556798 SMIM27A0A1W2PRY6 76 aa11.99□□□□□ -0.49
SHMT2-225ENST00000556798 NEXN-AS1Q8NBZ9 246 aa11.99□□□□□ -0.49
SHMT2-225ENST00000556798 RPL36AP83881 106 aaKnown RBP11.98□□□□□ -0.49
SHMT2-225ENST00000556798 WFDC10BQ8IUB3 73 aa11.98□□□□□ -0.49
SHMT2-225ENST00000556798 RPL36ALQ969Q0 106 aaKnown RBP11.98□□□□□ -0.49
SHMT2-225ENST00000556798 GTSF1LQ9H1H1 148 aa11.98□□□□□ -0.49
SHMT2-225ENST00000556798 TRBV7-3A0A075B6L6 115 aa11.97□□□□□ -0.49
SHMT2-225ENST00000556798 SMIM15Q7Z3B0 74 aa11.97□□□□□ -0.49
SHMT2-225ENST00000556798 DNAH2Q9P225 4427 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 TRAV26-2A0A0B4J265 109 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 NBDYA0A0U1RRE5 68 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 M0QY20 66 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 PPP1R2P9O14990 202 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 SIVA1O15304 175 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 TIRAPP58753 221 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 UBE2D3P61077 147 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 UBE2D2P62837 147 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 RIGQ13278 110 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 Q6ZR54 194 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 155.2 ms