RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 NAT8Q9UHE5 227 aa7.94□□□□□ -1.14
CCDC88C-212ENST00000556767 KMT2CQ8NEZ4 4911 aaKnown RBP7.94□□□□□ -1.14
CCDC88C-212ENST00000556767 F2Z2F3 143 aa7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 M0R2N4 97 aa7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 NXPH4O95158 308 aa7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 SMIM17P0DL12 118 aa7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 FAM3BP58499 235 aaPredicted RBP7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 ZNF56Q15929 161 aa7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 LYZL1Q6UWQ5 148 aa7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 Q6ZSN1 163 aa7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 C14orf178Q8N769 122 aaPredicted RBP7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 C15orf54Q8N8G6 183 aa7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 AP1S3Q96PC3 154 aa7.93□□□□□ -1.14
CCDC88C-212ENST00000556767 DYNC2H1Q8NCM8 4307 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 GAGE12JA6NER3 117 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 A8MWL6 223 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 F5H697 171 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 CRYGDP07320 174 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 RPL23P62829 140 aaKnown RBP7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 GAGE1Q13065 139 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 GAGE4Q13068 117 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 GAGE5Q13069 117 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 GAGE13Q4V321 117 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 UFSP1Q6NVU6 142 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 LYPD5Q6UWN5 251 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 OSTCQ9NRP0 149 aa7.92□□□□□ -1.14
CCDC88C-212ENST00000556767 MGPP08493 103 aa7.91□□□□□ -1.14
CCDC88C-212ENST00000556767 TWIST1Q15672 202 aa7.91□□□□□ -1.14
CCDC88C-212ENST00000556767 SH2D6Q7Z4S9 175 aa7.91□□□□□ -1.14
CCDC88C-212ENST00000556767 ISOC2Q96AB3 205 aa7.91□□□□□ -1.14
CCDC88C-212ENST00000556767 PGLYRP4Q96LB8 373 aa7.91□□□□□ -1.14
CCDC88C-212ENST00000556767 MSRB1Q9NZV6 116 aa7.91□□□□□ -1.14
CCDC88C-212ENST00000556767 MRPS16Q9Y3D3 137 aaKnown RBP7.91□□□□□ -1.14
CCDC88C-212ENST00000556767 ALMS1Q8TCU4 4167 aa7.91□□□□□ -1.14
CCDC88C-212ENST00000556767 TRGC1P0CF51 173 aa7.9□□□□□ -1.14
CCDC88C-212ENST00000556767 NTF3P20783 257 aa7.9□□□□□ -1.14
CCDC88C-212ENST00000556767 CTRLP40313 264 aa7.9□□□□□ -1.14
CCDC88C-212ENST00000556767 CT83Q5H943 113 aa7.9□□□□□ -1.14
CCDC88C-212ENST00000556767 OR10G8Q8NGN5 311 aa7.9□□□□□ -1.14
CCDC88C-212ENST00000556767 ZNRF2Q8NHG8 242 aa7.9□□□□□ -1.14
CCDC88C-212ENST00000556767 GTSF1Q8WW33 167 aa7.9□□□□□ -1.14
CCDC88C-212ENST00000556767 BORCS7Q96B45 105 aa7.9□□□□□ -1.14
CCDC88C-212ENST00000556767 Q9H8V8 135 aa7.9□□□□□ -1.14
CCDC88C-212ENST00000556767 RAB4BP61018 213 aa7.89□□□□□ -1.15
CCDC88C-212ENST00000556767 ATP6V0E2Q8NHE4 81 aa7.89□□□□□ -1.15
CCDC88C-212ENST00000556767 TSKUQ8WUA8 353 aa7.89□□□□□ -1.15
CCDC88C-212ENST00000556767 EVI2AP22794 236 aa7.88□□□□□ -1.15
CCDC88C-212ENST00000556767 WDR73Q6P4I2 378 aa7.88□□□□□ -1.15
CCDC88C-212ENST00000556767 SMIM15Q7Z3B0 74 aa7.88□□□□□ -1.15
CCDC88C-212ENST00000556767 UPK3BQ9BT76 320 aa7.88□□□□□ -1.15
CCDC88C-212ENST00000556767 Q9UF83 564 aa7.88□□□□□ -1.15
CCDC88C-212ENST00000556767 V9GYV3 84 aa7.88□□□□□ -1.15
CCDC88C-212ENST00000556767 SACSQ9NZJ4 4579 aa7.88□□□□□ -1.15
CCDC88C-212ENST00000556767 RYR2Q92736 4967 aa7.88□□□□□ -1.15
CCDC88C-212ENST00000556767 TRBV10-1A0A0K0K1A3 114 aa7.87□□□□□ -1.15
CCDC88C-212ENST00000556767 NBDYA0A0U1RRE5 68 aa7.87□□□□□ -1.15
CCDC88C-212ENST00000556767 HIGD1CA8MV81 97 aa7.87□□□□□ -1.15
CCDC88C-212ENST00000556767 SIVA1O15304 175 aa7.87□□□□□ -1.15
CCDC88C-212ENST00000556767 RPL36AP83881 106 aaKnown RBP7.87□□□□□ -1.15
CCDC88C-212ENST00000556767 COMMD7Q86VX2 200 aa7.87□□□□□ -1.15
CCDC88C-212ENST00000556767 RPL36ALQ969Q0 106 aaKnown RBP7.87□□□□□ -1.15
CCDC88C-212ENST00000556767 GFRA4Q9GZZ7 299 aa7.87□□□□□ -1.15
CCDC88C-212ENST00000556767 DPH3P1Q9H4G8 78 aa7.87□□□□□ -1.15
CCDC88C-212ENST00000556767 KIF25-AS1Q9Y6Z4 181 aa7.87□□□□□ -1.15
CCDC88C-212ENST00000556767 TRAV8-6A0A0B4J262 113 aa7.86□□□□□ -1.15
CCDC88C-212ENST00000556767 OR10J3Q5JRS4 329 aa7.86□□□□□ -1.15
CCDC88C-212ENST00000556767 UQCC3Q6UW78 93 aa7.86□□□□□ -1.15
CCDC88C-212ENST00000556767 CNFNQ9BYD5 112 aa7.86□□□□□ -1.15
CCDC88C-212ENST00000556767 GTSF1LQ9H1H1 148 aa7.86□□□□□ -1.15
CCDC88C-212ENST00000556767 RYR3Q15413 4870 aa7.86□□□□□ -1.15
CCDC88C-212ENST00000556767 TRBV7-3A0A075B6L6 115 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 A0A1B0GUT8 65 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 FAM231BA6NCW3 169 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 H7C1H1 209 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 FOXA3P55318 350 aaPredicted RBP7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 LINC00315P59091 139 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 TTC32Q5I0X7 151 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 SUMO4Q6EEV6 95 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 Q6ZR54 194 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 WFDC10BQ8IUB3 73 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 NEXN-AS1Q8NBZ9 246 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 NAT8BQ9UHF3 227 aa7.85□□□□□ -1.15
CCDC88C-212ENST00000556767 F8W036 122 aa7.84□□□□□ -1.15
CCDC88C-212ENST00000556767 LINC00694P0DN24 101 aa7.84□□□□□ -1.15
CCDC88C-212ENST00000556767 TIRAPP58753 221 aa7.84□□□□□ -1.15
CCDC88C-212ENST00000556767 PNRC1Q12796 327 aaPredicted RBP7.84□□□□□ -1.15
CCDC88C-212ENST00000556767 RIGQ13278 110 aa7.84□□□□□ -1.15
CCDC88C-212ENST00000556767 LELP1Q5T871 98 aa7.84□□□□□ -1.15
CCDC88C-212ENST00000556767 NUP35Q8NFH5 326 aa7.84□□□□□ -1.15
CCDC88C-212ENST00000556767 TNFRSF18Q9Y5U5 241 aa7.84□□□□□ -1.15
CCDC88C-212ENST00000556767 HYDINQ4G0P3 5121 aa7.83□□□□□ -1.16
CCDC88C-212ENST00000556767 IGHV3-38A0A0C4DH36 116 aa7.83□□□□□ -1.16
CCDC88C-212ENST00000556767 TMEM218A2RU14 115 aa7.83□□□□□ -1.16
CCDC88C-212ENST00000556767 M0QY20 66 aa7.83□□□□□ -1.16
CCDC88C-212ENST00000556767 UBE2D3P61077 147 aa7.83□□□□□ -1.16
CCDC88C-212ENST00000556767 UBE2D2P62837 147 aa7.83□□□□□ -1.16
CCDC88C-212ENST00000556767 C1orf134Q5TEV5 83 aa7.83□□□□□ -1.16
CCDC88C-212ENST00000556767 RASL11AQ6T310 242 aa7.83□□□□□ -1.16
CCDC88C-212ENST00000556767 DNAH1Q9P2D7 4330 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms