RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 PLA2G2AP14555 144 aa6.32□□□□□ -1.4
SYNE2-220ENST00000555612 VSIG2Q96IQ7 327 aa6.32□□□□□ -1.4
SYNE2-220ENST00000555612 hADV29S1A0JD25 119 aa6.32□□□□□ -1.4
SYNE2-220ENST00000555612 DSCR8Q96T75 97 aa6.32□□□□□ -1.4
SYNE2-220ENST00000555612 MAP6D1Q9H9H5 199 aa6.32□□□□□ -1.4
SYNE2-220ENST00000555612 CSPG4Q6UVK1 2322 aa6.31□□□□□ -1.4
SYNE2-220ENST00000555612 LINC01548A6NM66 108 aa6.31□□□□□ -1.4
SYNE2-220ENST00000555612 K7EN84 100 aa6.31□□□□□ -1.4
SYNE2-220ENST00000555612 PATE2Q6UY27 113 aa6.31□□□□□ -1.4
SYNE2-220ENST00000555612 C22orf34Q6ZV56 151 aa6.31□□□□□ -1.4
SYNE2-220ENST00000555612 SPANXA1Q9NS26 97 aa6.31□□□□□ -1.4
SYNE2-220ENST00000555612 DLEU1O43261 78 aa6.31□□□□□ -1.4
SYNE2-220ENST00000555612 HIST2H2BDQ6DRA6 164 aa6.31□□□□□ -1.4
SYNE2-220ENST00000555612 ZNF664Q8N3J9 261 aa6.31□□□□□ -1.4
SYNE2-220ENST00000555612 SONP18583 2426 aaKnown RBP6.31□□□□□ -1.4
SYNE2-220ENST00000555612 MRPL36Q9P0J6 103 aaKnown RBP6.31□□□□□ -1.4
SYNE2-220ENST00000555612 WI2-2373I1.2A0A1W2PRP0 233 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 FGF6P10767 208 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 ODF3L1Q8IXM7 274 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 SHANK1Q9Y566 2161 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 DYSFO75923 2080 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 MSRB1Q9NZV6 116 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 DKK2Q9UBU2 259 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 TINCRA0A1B0GVN0 87 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 E7EUB6 86 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 HILS1P60008 231 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 TRAV12-1A0A0B4J245 112 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 NDUFA1O15239 70 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 C4orf48Q5BLP8 95 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 TRBV7-3A0A075B6L6 115 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 SIGMAR1Q99720 223 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 SPATA25Q9BR10 227 aa6.3□□□□□ -1.4
SYNE2-220ENST00000555612 INAFM2P0DMQ5 153 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 LGALS9BQ3B8N2 356 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 LGALS9CQ6DKI2 356 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 Q6ZSV7 163 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 EP400Q96L91 3159 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 LINC00482Q8N8I6 264 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 C2orf16Q68DN1 1984 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 DENND4CQ5VZ89 1909 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 UBL5Q9BZL1 73 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 UTF1Q5T230 341 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 TMEM263Q8WUH6 116 aaKnown RBP6.29□□□□□ -1.4
SYNE2-220ENST00000555612 C11orf1Q9H5F2 150 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 PRO0255Q9UI72 69 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 IGKV2-24A0A0C4DH68 120 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 ODF3BA8MYP8 253 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 IGHG4P01861 327 aa6.29□□□□□ -1.4
SYNE2-220ENST00000555612 TRAV26-1A0A087WT03 109 aa6.28□□□□□ -1.4
SYNE2-220ENST00000555612 A0A0J9YX75 114 aa6.28□□□□□ -1.4
SYNE2-220ENST00000555612 ZFP2Q6ZN57 461 aa6.28□□□□□ -1.4
SYNE2-220ENST00000555612 A0A0J9YXV3 536 aa6.28□□□□□ -1.4
SYNE2-220ENST00000555612 ZFAND6Q6FIF0 208 aa6.28□□□□□ -1.4
SYNE2-220ENST00000555612 C9orf47Q6ZRZ4 202 aa6.28□□□□□ -1.4
SYNE2-220ENST00000555612 COX7B2Q8TF08 81 aa6.28□□□□□ -1.4
SYNE2-220ENST00000555612 PLA2G2EQ9NZK7 142 aa6.28□□□□□ -1.4
SYNE2-220ENST00000555612 NCOR2Q9Y618 2525 aa6.27□□□□□ -1.4
SYNE2-220ENST00000555612 PRB2P02812 416 aaPredicted RBP6.27□□□□□ -1.41
SYNE2-220ENST00000555612 CCDC140Q96MF4 163 aa6.27□□□□□ -1.41
SYNE2-220ENST00000555612 ANKHD1Q8IWZ3 2542 aaKnown RBP6.27□□□□□ -1.41
SYNE2-220ENST00000555612 DEFB131BA0A096LNP1 70 aa6.27□□□□□ -1.41
SYNE2-220ENST00000555612 HERV-K104P63124 156 aa6.27□□□□□ -1.41
SYNE2-220ENST00000555612 SPAG11BQ08648 103 aa6.27□□□□□ -1.41
SYNE2-220ENST00000555612 PRO1854Q9UHT4 67 aa6.27□□□□□ -1.41
SYNE2-220ENST00000555612 NCR3O14931 201 aa6.27□□□□□ -1.41
SYNE2-220ENST00000555612 FAM222AQ5U5X8 452 aa6.27□□□□□ -1.41
SYNE2-220ENST00000555612 MDFICQ9P1T7 246 aa6.27□□□□□ -1.41
SYNE2-220ENST00000555612 IGHV4-28A0A0C4DH34 117 aa6.27□□□□□ -1.41
SYNE2-220ENST00000555612 LRCOL1A6NCL2 159 aa6.27□□□□□ -1.41
SYNE2-220ENST00000555612 CARD19Q96LW7 228 aa6.26□□□□□ -1.41
SYNE2-220ENST00000555612 POLR3KQ9Y2Y1 108 aaPredicted RBP6.26□□□□□ -1.41
SYNE2-220ENST00000555612 COX11Q9Y6N1 276 aa6.26□□□□□ -1.41
SYNE2-220ENST00000555612 NCKAP5O14513 1909 aa6.26□□□□□ -1.41
SYNE2-220ENST00000555612 RPL39P62891 51 aaKnown RBP6.26□□□□□ -1.41
SYNE2-220ENST00000555612 HIGD2BQ4VC39 106 aa6.26□□□□□ -1.41
SYNE2-220ENST00000555612 C10orf99Q6UWK7 81 aa6.26□□□□□ -1.41
SYNE2-220ENST00000555612 EML6Q6ZMW3 1958 aa6.26□□□□□ -1.41
SYNE2-220ENST00000555612 K7EMI3 77 aa6.26□□□□□ -1.41
SYNE2-220ENST00000555612 CCL25O15444 150 aa6.26□□□□□ -1.41
SYNE2-220ENST00000555612 KIR2DL5BA0A0G2JN68 375 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 KIR2DL5BA0A0G2JPC4 375 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 Q6ZTI0 123 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 KIR2DL5AQ8N109 375 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 GTSF1Q8WW33 167 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.25□□□□□ -1.41
SYNE2-220ENST00000555612 GAGE12HA6NDE8 117 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 DEFB114Q30KQ6 69 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 SND1-IT1Q9HBX3 110 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 SMR3AQ99954 134 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 K7ERJ3 54 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 DOCK11Q5JSL3 2073 aa6.25□□□□□ -1.41
SYNE2-220ENST00000555612 TRBV20-1A0A075B6N2 111 aa6.24□□□□□ -1.41
SYNE2-220ENST00000555612 COX8AP10176 69 aa6.24□□□□□ -1.41
SYNE2-220ENST00000555612 BVES-AS1Q5T3Y7 98 aa6.24□□□□□ -1.41
SYNE2-220ENST00000555612 LTBP2Q14767 1821 aa6.24□□□□□ -1.41
SYNE2-220ENST00000555612 C9orf153Q5TBE3 101 aa6.24□□□□□ -1.41
SYNE2-220ENST00000555612 C11orf71Q6IPW1 123 aa6.24□□□□□ -1.41
SYNE2-220ENST00000555612 CEND1Q8N111 149 aa6.24□□□□□ -1.41
SYNE2-220ENST00000555612 ORMDL1Q9P0S3 153 aa6.24□□□□□ -1.41
SYNE2-220ENST00000555612 IGF1P05019 195 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms