RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 A0A087WWL8 130 aa13.91□□□□□ -0.18
VTI1B-205ENST00000555543 IFNA1P01562 189 aa13.91□□□□□ -0.18
VTI1B-205ENST00000555543 CXCL1P09341 107 aa13.91□□□□□ -0.18
VTI1B-205ENST00000555543 DNAH10OSP0CZ25 163 aa13.91□□□□□ -0.18
VTI1B-205ENST00000555543 FAM74A4Q5TZK3 123 aa13.91□□□□□ -0.18
VTI1B-205ENST00000555543 ZFP82Q8N141 532 aa13.91□□□□□ -0.18
VTI1B-205ENST00000555543 LYPD6BQ8NI32 183 aa13.91□□□□□ -0.18
VTI1B-205ENST00000555543 RAB19A4D1S5 217 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 GAGE12JA6NER3 117 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 RHODO00212 210 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 PDE6DO43924 150 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 CRYGDP07320 174 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 MED14OSP0DP75 135 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 GAGE1Q13065 139 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 GAGE4Q13068 117 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 GAGE5Q13069 117 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 GAGE13Q4V321 117 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 OR10AG1Q8NH19 301 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 DNAH5Q8TE73 4624 aa13.9□□□□□ -0.18
VTI1B-205ENST00000555543 TRBV20OR9-2A0A075B6H5 130 aa13.89□□□□□ -0.19
VTI1B-205ENST00000555543 SLC7A5P1Q8MH63 180 aa13.89□□□□□ -0.19
VTI1B-205ENST00000555543 ATP6V0E2Q8NHE4 81 aa13.89□□□□□ -0.19
VTI1B-205ENST00000555543 SNAI2O43623 268 aa13.88□□□□□ -0.19
VTI1B-205ENST00000555543 EVI2AP22794 236 aa13.88□□□□□ -0.19
VTI1B-205ENST00000555543 COMMD7Q86VX2 200 aa13.88□□□□□ -0.19
VTI1B-205ENST00000555543 GTSF1LQ9H1H1 148 aa13.88□□□□□ -0.19
VTI1B-205ENST00000555543 VAX2Q9UIW0 290 aa13.88□□□□□ -0.19
VTI1B-205ENST00000555543 MUC21A0A0G2JKD1 596 aa13.87□□□□□ -0.19
VTI1B-205ENST00000555543 MUC21A0A140T8X8 626 aa13.87□□□□□ -0.19
VTI1B-205ENST00000555543 GNG4P50150 75 aa13.87□□□□□ -0.19
VTI1B-205ENST00000555543 SSBP4Q9BWG4 385 aaPredicted RBP13.87□□□□□ -0.19
VTI1B-205ENST00000555543 TRAV9-2A0A087WT02 112 aa13.86□□□□□ -0.19
VTI1B-205ENST00000555543 IGHV3-38A0A0C4DH36 116 aa13.86□□□□□ -0.19
VTI1B-205ENST00000555543 OR10J3Q5JRS4 329 aa13.86□□□□□ -0.19
VTI1B-205ENST00000555543 LELP1Q5T871 98 aa13.86□□□□□ -0.19
VTI1B-205ENST00000555543 TRAV8-6A0A0B4J262 113 aa13.85□□□□□ -0.19
VTI1B-205ENST00000555543 C19orf71A6NCJ1 209 aa13.85□□□□□ -0.19
VTI1B-205ENST00000555543 K7EP13 123 aa13.85□□□□□ -0.19
VTI1B-205ENST00000555543 OR5AL1P0C617 328 aa13.85□□□□□ -0.19
VTI1B-205ENST00000555543 LINC01556Q5JQF7 62 aa13.85□□□□□ -0.19
VTI1B-205ENST00000555543 SPATA12Q7Z6I5 190 aa13.85□□□□□ -0.19
VTI1B-205ENST00000555543 MSRB1Q9NZV6 116 aa13.85□□□□□ -0.19
VTI1B-205ENST00000555543 C16orf90A8MZG2 172 aa13.84□□□□□ -0.19
VTI1B-205ENST00000555543 GZMBP10144 247 aa13.84□□□□□ -0.19
VTI1B-205ENST00000555543 SMIM12Q96EX1 92 aa13.84□□□□□ -0.19
VTI1B-205ENST00000555543 TAGLN2P37802 199 aaKnown RBP13.83□□□□□ -0.2
VTI1B-205ENST00000555543 KRTAP10-2P60368 255 aa13.83□□□□□ -0.2
VTI1B-205ENST00000555543 PCLOQ9Y6V0 5065 aa13.82□□□□□ -0.2
VTI1B-205ENST00000555543 SSTP61278 116 aa13.82□□□□□ -0.2
VTI1B-205ENST00000555543 SPANXN1Q5VSR9 72 aa13.82□□□□□ -0.2
VTI1B-205ENST00000555543 NFE4Q86UQ8 179 aa13.82□□□□□ -0.2
VTI1B-205ENST00000555543 Q8N3U1 123 aa13.82□□□□□ -0.2
VTI1B-205ENST00000555543 C10orf126Q8N4M7 172 aa13.82□□□□□ -0.2
VTI1B-205ENST00000555543 OR2D3Q8NGH3 330 aa13.82□□□□□ -0.2
VTI1B-205ENST00000555543 RBFOX3A6NFN3 312 aa13.81□□□□□ -0.2
VTI1B-205ENST00000555543 ATP6V1G1O75348 118 aa13.81□□□□□ -0.2
VTI1B-205ENST00000555543 IGHV3-30P01768 117 aa13.81□□□□□ -0.2
VTI1B-205ENST00000555543 IGHV3-33P01772 117 aa13.81□□□□□ -0.2
VTI1B-205ENST00000555543 IGLC6P0CF74 106 aa13.81□□□□□ -0.2
VTI1B-205ENST00000555543 IGHV3-30-3P0DP02 117 aa13.81□□□□□ -0.2
VTI1B-205ENST00000555543 IGHV3-30-5P0DP03 117 aa13.81□□□□□ -0.2
VTI1B-205ENST00000555543 DAZAP1Q96EP5 407 aaKnown RBP13.81□□□□□ -0.2
VTI1B-205ENST00000555543 APOBP04114 4563 aaKnown RBP13.8□□□□□ -0.2
VTI1B-205ENST00000555543 UQCC3Q6UW78 93 aa13.8□□□□□ -0.2
VTI1B-205ENST00000555543 HSPG2P98160 4391 aa13.8□□□□□ -0.2
VTI1B-205ENST00000555543 P01737 135 aa13.79□□□□□ -0.2
VTI1B-205ENST00000555543 ZNF56Q15929 161 aa13.79□□□□□ -0.2
VTI1B-205ENST00000555543 FAM210AQ96ND0 272 aa13.79□□□□□ -0.2
VTI1B-205ENST00000555543 TPPP3Q9BW30 176 aa13.79□□□□□ -0.2
VTI1B-205ENST00000555543 TRBV10-1A0A0K0K1A3 114 aa13.78□□□□□ -0.2
VTI1B-205ENST00000555543 IBA57-AS1B1ANH7 110 aa13.78□□□□□ -0.2
VTI1B-205ENST00000555543 K7EN84 100 aa13.78□□□□□ -0.2
VTI1B-205ENST00000555543 RPS20P60866 119 aaKnown RBP13.78□□□□□ -0.2
VTI1B-205ENST00000555543 RAB4BP61018 213 aa13.78□□□□□ -0.2
VTI1B-205ENST00000555543 FER1L6-AS1Q8NA97 138 aa13.78□□□□□ -0.2
VTI1B-205ENST00000555543 KRTAP17-1Q9BYP8 105 aa13.78□□□□□ -0.2
VTI1B-205ENST00000555543 KIF25-AS1Q9Y6Z4 181 aa13.78□□□□□ -0.2
VTI1B-205ENST00000555543 ERVFC1-1P60608 527 aa13.77□□□□□ -0.21
VTI1B-205ENST00000555543 UBE2D3P61077 147 aa13.77□□□□□ -0.21
VTI1B-205ENST00000555543 UBE2D2P62837 147 aa13.77□□□□□ -0.21
VTI1B-205ENST00000555543 TMEM250H0YL14 139 aa13.76□□□□□ -0.21
VTI1B-205ENST00000555543 FUSP35637 526 aaKnown RBP eCLIP13.76□□□□□ -0.21
VTI1B-205ENST00000555543 RPL36AP83881 106 aaKnown RBP13.76□□□□□ -0.21
VTI1B-205ENST00000555543 PEA15Q15121 130 aa13.76□□□□□ -0.21
VTI1B-205ENST00000555543 NEXN-AS1Q8NBZ9 246 aa13.76□□□□□ -0.21
VTI1B-205ENST00000555543 NUDT10Q8NFP7 164 aa13.76□□□□□ -0.21
VTI1B-205ENST00000555543 OR10G8Q8NGN5 311 aa13.76□□□□□ -0.21
VTI1B-205ENST00000555543 OCC1Q8TAD7 63 aa13.76□□□□□ -0.21
VTI1B-205ENST00000555543 RPL36ALQ969Q0 106 aaKnown RBP13.76□□□□□ -0.21
VTI1B-205ENST00000555543 NUDT11Q96G61 164 aa13.76□□□□□ -0.21
VTI1B-205ENST00000555543 AP1S3Q96PC3 154 aa13.76□□□□□ -0.21
VTI1B-205ENST00000555543 BIN3Q9NQY0 253 aa13.76□□□□□ -0.21
VTI1B-205ENST00000555543 TRBV7-3A0A075B6L6 115 aa13.75□□□□□ -0.21
VTI1B-205ENST00000555543 A0A087WTM6 91 aa13.75□□□□□ -0.21
VTI1B-205ENST00000555543 A0A087WWC5 75 aa13.75□□□□□ -0.21
VTI1B-205ENST00000555543 SRSF3P84103 164 aaKnown RBP13.75□□□□□ -0.21
VTI1B-205ENST00000555543 TOR2AQ5JU69 321 aa13.75□□□□□ -0.21
VTI1B-205ENST00000555543 RNASE7Q9H1E1 156 aaKnown RBP13.75□□□□□ -0.21
VTI1B-205ENST00000555543 SMDT1Q9H4I9 107 aa13.75□□□□□ -0.21
VTI1B-205ENST00000555543 Q9HAA7 133 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms