RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 SMIM12Q96EX1 92 aa13.04□□□□□ -0.32
PTCH1-227ENST00000553256 BOLA1Q9Y3E2 137 aa13.04□□□□□ -0.32
PTCH1-227ENST00000553256 PHLDA3Q9Y5J5 127 aa13.04□□□□□ -0.32
PTCH1-227ENST00000553256 K7EP13 123 aa13.03□□□□□ -0.32
PTCH1-227ENST00000553256 OR5AL1P0C617 328 aa13.03□□□□□ -0.32
PTCH1-227ENST00000553256 NKX2-5P52952 324 aaPredicted RBP13.03□□□□□ -0.32
PTCH1-227ENST00000553256 ALKAL2Q6UX46 152 aa13.03□□□□□ -0.32
PTCH1-227ENST00000553256 ZFP82Q8N141 532 aa13.03□□□□□ -0.32
PTCH1-227ENST00000553256 SYT8Q8NBV8 401 aa13.03□□□□□ -0.32
PTCH1-227ENST00000553256 VAX2Q9UIW0 290 aa13.03□□□□□ -0.32
PTCH1-227ENST00000553256 LY96Q9Y6Y9 160 aa13.03□□□□□ -0.32
PTCH1-227ENST00000553256 RHODO00212 210 aa13.02□□□□□ -0.33
PTCH1-227ENST00000553256 GTSF1LQ9H1H1 148 aa13.02□□□□□ -0.33
PTCH1-227ENST00000553256 ABCA13Q86UQ4 5058 aa13.01□□□□□ -0.33
PTCH1-227ENST00000553256 A0A087WWL8 130 aa13.01□□□□□ -0.33
PTCH1-227ENST00000553256 M0R381 172 aa13.01□□□□□ -0.33
PTCH1-227ENST00000553256 IGLC6P0CF74 106 aa13.01□□□□□ -0.33
PTCH1-227ENST00000553256 LINC01556Q5JQF7 62 aa13.01□□□□□ -0.33
PTCH1-227ENST00000553256 LELP1Q5T871 98 aa13.01□□□□□ -0.33
PTCH1-227ENST00000553256 PRR27Q6MZM9 219 aa13.01□□□□□ -0.33
PTCH1-227ENST00000553256 ATP6V0E2Q8NHE4 81 aa13.01□□□□□ -0.33
PTCH1-227ENST00000553256 KIF25-AS1Q9Y6Z4 181 aa13.01□□□□□ -0.33
PTCH1-227ENST00000553256 IFNA1P01562 189 aa13□□□□□ -0.33
PTCH1-227ENST00000553256 TAGLN2P37802 199 aaKnown RBP13□□□□□ -0.33
PTCH1-227ENST00000553256 IGHV3-38A0A0C4DH36 116 aa12.99□□□□□ -0.33
PTCH1-227ENST00000553256 GAGE12JA6NER3 117 aa12.99□□□□□ -0.33
PTCH1-227ENST00000553256 GAGE1Q13065 139 aa12.99□□□□□ -0.33
PTCH1-227ENST00000553256 GAGE4Q13068 117 aa12.99□□□□□ -0.33
PTCH1-227ENST00000553256 GAGE5Q13069 117 aa12.99□□□□□ -0.33
PTCH1-227ENST00000553256 GAGE13Q4V321 117 aa12.99□□□□□ -0.33
PTCH1-227ENST00000553256 MED9Q9NWA0 146 aa12.99□□□□□ -0.33
PTCH1-227ENST00000553256 GNG4P50150 75 aa12.98□□□□□ -0.33
PTCH1-227ENST00000553256 KRTAP10-2P60368 255 aa12.98□□□□□ -0.33
PTCH1-227ENST00000553256 BLOC1S1P78537 153 aa12.97□□□□□ -0.33
PTCH1-227ENST00000553256 FAM74A4Q5TZK3 123 aa12.97□□□□□ -0.33
PTCH1-227ENST00000553256 OR10G8Q8NGN5 311 aa12.97□□□□□ -0.33
PTCH1-227ENST00000553256 DNAH8Q96JB1 4490 aa12.96□□□□□ -0.33
PTCH1-227ENST00000553256 TRAV9-2A0A087WT02 112 aa12.96□□□□□ -0.33
PTCH1-227ENST00000553256 MUC21A0A0G2JKD1 596 aa12.96□□□□□ -0.33
PTCH1-227ENST00000553256 TRBV10-1A0A0K0K1A3 114 aa12.96□□□□□ -0.33
PTCH1-227ENST00000553256 MUC21A0A140T8X8 626 aa12.96□□□□□ -0.33
PTCH1-227ENST00000553256 K7EN84 100 aa12.96□□□□□ -0.33
PTCH1-227ENST00000553256 GZMBP10144 247 aa12.96□□□□□ -0.33
PTCH1-227ENST00000553256 EVI2AP22794 236 aa12.96□□□□□ -0.33
PTCH1-227ENST00000553256 Q8N3U1 123 aa12.96□□□□□ -0.33
PTCH1-227ENST00000553256 MSRB1Q9NZV6 116 aa12.96□□□□□ -0.33
PTCH1-227ENST00000553256 IBA57-AS1B1ANH7 110 aa12.95□□□□□ -0.34
PTCH1-227ENST00000553256 KRTAP17-1Q9BYP8 105 aa12.95□□□□□ -0.34
PTCH1-227ENST00000553256 RBFOX3A6NFN3 312 aa12.94□□□□□ -0.34
PTCH1-227ENST00000553256 TMEM250H0YL14 139 aa12.94□□□□□ -0.34
PTCH1-227ENST00000553256 NDUFS6O75380 124 aaKnown RBP12.94□□□□□ -0.34
PTCH1-227ENST00000553256 RAB4BP61018 213 aa12.94□□□□□ -0.34
PTCH1-227ENST00000553256 UBE2D3P61077 147 aa12.94□□□□□ -0.34
PTCH1-227ENST00000553256 UBE2D2P62837 147 aa12.94□□□□□ -0.34
PTCH1-227ENST00000553256 SPATA12Q7Z6I5 190 aa12.94□□□□□ -0.34
PTCH1-227ENST00000553256 NFE4Q86UQ8 179 aa12.94□□□□□ -0.34
PTCH1-227ENST00000553256 C10orf126Q8N4M7 172 aa12.94□□□□□ -0.34
PTCH1-227ENST00000553256 OR2D3Q8NGH3 330 aa12.94□□□□□ -0.34
PTCH1-227ENST00000553256 OCC1Q8TAD7 63 aa12.94□□□□□ -0.34
PTCH1-227ENST00000553256 TRAV8-6A0A0B4J262 113 aa12.93□□□□□ -0.34
PTCH1-227ENST00000553256 OR10J3Q5JRS4 329 aa12.93□□□□□ -0.34
PTCH1-227ENST00000553256 NUDT10Q8NFP7 164 aa12.93□□□□□ -0.34
PTCH1-227ENST00000553256 NUDT11Q96G61 164 aa12.93□□□□□ -0.34
PTCH1-227ENST00000553256 RPS20P60866 119 aaKnown RBP12.92□□□□□ -0.34
PTCH1-227ENST00000553256 NEXN-AS1Q8NBZ9 246 aa12.92□□□□□ -0.34
PTCH1-227ENST00000553256 CNFNQ9BYD5 112 aa12.92□□□□□ -0.34
PTCH1-227ENST00000553256 A0A087WTM6 91 aa12.91□□□□□ -0.34
PTCH1-227ENST00000553256 SPANXN1Q5VSR9 72 aa12.91□□□□□ -0.34
PTCH1-227ENST00000553256 FER1L6-AS1Q8NA97 138 aa12.91□□□□□ -0.34
PTCH1-227ENST00000553256 TRBV7-3A0A075B6L6 115 aa12.9□□□□□ -0.34
PTCH1-227ENST00000553256 LRCOL1A6NCL2 159 aa12.9□□□□□ -0.34
PTCH1-227ENST00000553256 C16orf90A8MZG2 172 aa12.9□□□□□ -0.34
PTCH1-227ENST00000553256 P01737 135 aa12.9□□□□□ -0.34
PTCH1-227ENST00000553256 CTRLP40313 264 aa12.9□□□□□ -0.34
PTCH1-227ENST00000553256 DAZAP1Q96EP5 407 aaKnown RBP12.9□□□□□ -0.34
PTCH1-227ENST00000553256 A0A087WWC5 75 aa12.89□□□□□ -0.35
PTCH1-227ENST00000553256 FAM210AQ96ND0 272 aa12.89□□□□□ -0.35
PTCH1-227ENST00000553256 RNASE7Q9H1E1 156 aaKnown RBP12.89□□□□□ -0.35
PTCH1-227ENST00000553256 BIN3Q9NQY0 253 aa12.89□□□□□ -0.35
PTCH1-227ENST00000553256 IGHV3-30P01768 117 aa12.88□□□□□ -0.35
PTCH1-227ENST00000553256 IGHV3-33P01772 117 aa12.88□□□□□ -0.35
PTCH1-227ENST00000553256 IGHV3-30-3P0DP02 117 aa12.88□□□□□ -0.35
PTCH1-227ENST00000553256 IGHV3-30-5P0DP03 117 aa12.88□□□□□ -0.35
PTCH1-227ENST00000553256 LAGE3Q14657 143 aa12.88□□□□□ -0.35
PTCH1-227ENST00000553256 WDR73Q6P4I2 378 aa12.88□□□□□ -0.35
PTCH1-227ENST00000553256 LYZL1Q6UWQ5 148 aa12.88□□□□□ -0.35
PTCH1-227ENST00000553256 NIT1Q86X76 327 aa12.88□□□□□ -0.35
PTCH1-227ENST00000553256 F2Z2F3 143 aa12.87□□□□□ -0.35
PTCH1-227ENST00000553256 M0QY20 66 aa12.87□□□□□ -0.35
PTCH1-227ENST00000553256 CACNG7P62955 275 aa12.87□□□□□ -0.35
PTCH1-227ENST00000553256 RPL36AP83881 106 aaKnown RBP12.87□□□□□ -0.35
PTCH1-227ENST00000553256 TOR2AQ5JU69 321 aa12.87□□□□□ -0.35
PTCH1-227ENST00000553256 FAM231DQ6ZW35 169 aa12.87□□□□□ -0.35
PTCH1-227ENST00000553256 GTSF1Q8WW33 167 aa12.87□□□□□ -0.35
PTCH1-227ENST00000553256 RPL36ALQ969Q0 106 aaKnown RBP12.87□□□□□ -0.35
PTCH1-227ENST00000553256 AP1S3Q96PC3 154 aa12.87□□□□□ -0.35
PTCH1-227ENST00000553256 FAT1Q14517 4588 aa12.87□□□□□ -0.35
PTCH1-227ENST00000553256 CDK2AP2O75956 126 aa12.86□□□□□ -0.35
PTCH1-227ENST00000553256 SRP19P09132 144 aaKnown RBP12.86□□□□□ -0.35
PTCH1-227ENST00000553256 SSTP61278 116 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms