RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TRBV20-1A0A075B6N2 111 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 ZNF48Q96MX3 618 aaPredicted RBP3.68□□□□□ -1.82
LIMA1-214ENST00000552783 TRAV12-1A0A0B4J245 112 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 TRAV4A0A0B4J268 109 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 A0A0J9YY99 117 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 H7C2G1 150 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 UCNP55089 124 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 SUMO2P61956 95 aaKnown RBP3.67□□□□□ -1.82
LIMA1-214ENST00000552783 ADORA2A-AS1P86434 159 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 SRSF2Q01130 221 aaKnown RBP3.67□□□□□ -1.82
LIMA1-214ENST00000552783 TEN1Q86WV5 123 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 NPBQ8NG41 125 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 OPRPNQ99935 248 aaPredicted RBP3.67□□□□□ -1.82
LIMA1-214ENST00000552783 ZNF580Q9UK33 172 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 IGHV7-81A0A0B4J1V7 117 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 F6UB75 175 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 GNRH2O43555 120 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 ATP5J2P56134 94 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 EEF1AKMT3Q96AZ1 226 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 CCDC140Q96MF4 163 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 RNF5Q99942 180 aa3.67□□□□□ -1.82
LIMA1-214ENST00000552783 GNLYP22749 145 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 FAM74A4Q5TZK3 123 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 MAPK1IP1LQ8NDC0 245 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 ZNRF2Q8NHG8 242 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 AMELXQ99217 191 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 ANAPC13Q9BS18 74 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 ZNF462Q96JM2 2506 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 IGHV3-64A0A075B6Q5 118 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 LINC01619G3V211 115 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 CCDC179H3BU77 68 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 M0R1W7 72 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 IGHV3-30P01768 117 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 IGHV3-30-5P0DP03 117 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 PSMG4Q5JS54 123 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 GPHB5Q86YW7 130 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 ATP6V0E2Q8NHE4 81 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 PPDPFLQ8WWR9 84 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 PHLDA3Q9Y5J5 127 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 IGHV4-4A0A075B6R2 117 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 C1orf122Q6ZSJ8 110 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 OR11H6Q8NGC7 330 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 CITED1Q99966 193 aa3.66□□□□□ -1.82
LIMA1-214ENST00000552783 C9JAW5 83 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 H3BUX3 64 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 ZNF688P0C7X2 276 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 RNASE4P34096 147 aaKnown RBP3.65□□□□□ -1.82
LIMA1-214ENST00000552783 SBSPONQ8IVN8 264 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 OR10J6PQ8NGY7 276 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 ZANQ9Y493 2812 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 JMJD1CQ15652 2540 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 TRAV41A0A0B4J266 112 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 TEX49A0A1B0GTD5 131 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 NPFFO15130 113 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 Q6ZSV7 163 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 ZFAND2AQ8N6M9 145 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 Q8N9W7 124 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 LY6G5BQ8NDX9 201 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 TP53TG1Q9Y2A0 90 aa3.65□□□□□ -1.82
LIMA1-214ENST00000552783 ANKRD17O75179 2603 aaKnown RBP3.65□□□□□ -1.83
LIMA1-214ENST00000552783 ACANP16112 2415 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 FLNCQ14315 2725 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 HIVEP2P31629 2446 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 A4D1N5 150 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 A8MWV9 139 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 ODF3BA8MYP8 253 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 TRBV12-3P01733 135 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 LINC00315P59091 139 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 SHISA2Q6UWI4 295 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 C10orf126Q8N4M7 172 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 Q8N6K4 173 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 C3orf56Q8N813 242 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 DUX5Q96PT3 197 aa3.65□□□□□ -1.83
LIMA1-214ENST00000552783 A0A087WWL8 130 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 A0A1W2PPR1 153 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 RBAKDNA6NC62 111 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 IGIPA6NJ69 53 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 ADARB2-AS1A8MUL3 147 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 SLC25A20O43772 301 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 SCGB1C2P0DMR2 95 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 RNASE3P12724 160 aaKnown RBP3.64□□□□□ -1.83
LIMA1-214ENST00000552783 ORMDL2Q53FV1 153 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 TMEM170BQ5T4T1 132 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 MINOS1Q5TGZ0 78 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 UNQ9165/PRO28630Q6UXU0 137 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 C9orf47Q6ZRZ4 202 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 CCL19Q99731 98 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 SLC50A1Q9BRV3 221 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 MINOS1-NBL1R4GNA1 71 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 EDN2P20800 178 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 UBE2E1P51965 193 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 SLC25A29Q8N8R3 303 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 NTN5Q8WTR8 489 aaPredicted RBP3.64□□□□□ -1.83
LIMA1-214ENST00000552783 NRGNQ92686 78 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 BEX4Q9NWD9 120 aaPredicted RBP3.64□□□□□ -1.83
LIMA1-214ENST00000552783 ZFAND6Q6FIF0 208 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 Q8N1Y9 231 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 TEX29Q8N6K0 151 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 ODF3Q96PU9 254 aa3.64□□□□□ -1.83
LIMA1-214ENST00000552783 PRO1854Q9UHT4 67 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms