RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 TRAV6A0A075B6T7 132 aa6.68□□□□□ -1.34
VPS29-208ENST00000550267 C17orf112F2Z3M2 114 aa6.68□□□□□ -1.34
VPS29-208ENST00000550267 HLA-DQA1P01909 254 aa6.68□□□□□ -1.34
VPS29-208ENST00000550267 TAS2R45P59539 299 aa6.68□□□□□ -1.34
VPS29-208ENST00000550267 DGAT2L7PQ6IED9 249 aa6.68□□□□□ -1.34
VPS29-208ENST00000550267 KCNIP4Q6PIL6 250 aa6.68□□□□□ -1.34
VPS29-208ENST00000550267 ZC2HC1AQ96GY0 325 aa6.68□□□□□ -1.34
VPS29-208ENST00000550267 NDFIP1Q9BT67 221 aa6.68□□□□□ -1.34
VPS29-208ENST00000550267 CHCHD7Q9BUK0 85 aa6.68□□□□□ -1.34
VPS29-208ENST00000550267 GAS8-AS1O95177 125 aa6.67□□□□□ -1.34
VPS29-208ENST00000550267 SDIM1Q6ZPB5 146 aa6.67□□□□□ -1.34
VPS29-208ENST00000550267 ARL6IP6Q8N6S5 226 aa6.67□□□□□ -1.34
VPS29-208ENST00000550267 DPH3P1Q9H4G8 78 aa6.67□□□□□ -1.34
VPS29-208ENST00000550267 TMEM262E9PQX1 116 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 ZNF561-AS1K7EIQ3 104 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 CRPP02741 224 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 TCRBP04435 133 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 IL7P13232 177 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 C21orf62-AS1Q17RA5 79 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 C15orf54Q8N8G6 183 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 OR10G7Q8NGN6 311 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 OR2G3Q8NGZ4 309 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 OR5AC2Q9NZP5 309 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 PSG8Q9UQ74 426 aa6.66□□□□□ -1.34
VPS29-208ENST00000550267 IGKV3D-20A0A0C4DH25 116 aa6.65□□□□□ -1.34
VPS29-208ENST00000550267 PLA2G10O15496 165 aa6.65□□□□□ -1.34
VPS29-208ENST00000550267 S100A4P26447 101 aaKnown RBP6.65□□□□□ -1.34
VPS29-208ENST00000550267 RPL19P84098 196 aaKnown RBP6.65□□□□□ -1.34
VPS29-208ENST00000550267 SMUG1Q53HV7 270 aa6.65□□□□□ -1.34
VPS29-208ENST00000550267 PIK3CD-AS1Q5SR53 167 aa6.65□□□□□ -1.34
VPS29-208ENST00000550267 HSD17B11Q8NBQ5 300 aa6.65□□□□□ -1.34
VPS29-208ENST00000550267 LINC01600Q96MT4 127 aa6.65□□□□□ -1.34
VPS29-208ENST00000550267 NUDT15Q9NV35 164 aa6.65□□□□□ -1.34
VPS29-208ENST00000550267 CCDC160A6NGH7 325 aa6.64□□□□□ -1.35
VPS29-208ENST00000550267 H0YIZ8 118 aa6.64□□□□□ -1.35
VPS29-208ENST00000550267 HMGB3O15347 200 aaKnown RBP6.64□□□□□ -1.35
VPS29-208ENST00000550267 LYRM1O43325 122 aa6.64□□□□□ -1.35
VPS29-208ENST00000550267 TCRAP04437 139 aa6.64□□□□□ -1.35
VPS29-208ENST00000550267 CIRBPQ14011 172 aaKnown RBP6.64□□□□□ -1.35
VPS29-208ENST00000550267 ZFP69Q49AA0 526 aa6.64□□□□□ -1.35
VPS29-208ENST00000550267 MPV17L2Q567V2 206 aa6.64□□□□□ -1.35
VPS29-208ENST00000550267 FAM74A4Q5TZK3 123 aa6.64□□□□□ -1.35
VPS29-208ENST00000550267 PRNTQ86SH4 94 aa6.64□□□□□ -1.35
VPS29-208ENST00000550267 DPH3Q96FX2 82 aa6.64□□□□□ -1.35
VPS29-208ENST00000550267 A0A087WYN8 130 aa6.63□□□□□ -1.35
VPS29-208ENST00000550267 SERTM2A0A1B0GWG4 89 aa6.63□□□□□ -1.35
VPS29-208ENST00000550267 RHODO00212 210 aa6.63□□□□□ -1.35
VPS29-208ENST00000550267 PHOX2AO14813 284 aa6.63□□□□□ -1.35
VPS29-208ENST00000550267 SIX6O95475 246 aa6.63□□□□□ -1.35
VPS29-208ENST00000550267 ANGP03950 147 aaKnown RBP6.63□□□□□ -1.35
VPS29-208ENST00000550267 CHTF8P0CG12 524 aa6.63□□□□□ -1.35
VPS29-208ENST00000550267 UBE2D3P61077 147 aa6.63□□□□□ -1.35
VPS29-208ENST00000550267 UBE2D2P62837 147 aa6.63□□□□□ -1.35
VPS29-208ENST00000550267 FLI1Q01543 452 aaPredicted RBP6.63□□□□□ -1.35
VPS29-208ENST00000550267 LRRC37A5PQ49AS3 106 aa6.63□□□□□ -1.35
VPS29-208ENST00000550267 PQLC2Q6ZP29 291 aa6.63□□□□□ -1.35
VPS29-208ENST00000550267 A0A087WWL8 130 aa6.62□□□□□ -1.35
VPS29-208ENST00000550267 TRBV6-8A0A0A6YYG3 113 aa6.62□□□□□ -1.35
VPS29-208ENST00000550267 A0A1W2PPV4 95 aa6.62□□□□□ -1.35
VPS29-208ENST00000550267 H3BVH4 76 aa6.62□□□□□ -1.35
VPS29-208ENST00000550267 RPL36AP83881 106 aaKnown RBP6.62□□□□□ -1.35
VPS29-208ENST00000550267 MIAQ16674 131 aa6.62□□□□□ -1.35
VPS29-208ENST00000550267 KRTAP26-1Q6PEX3 210 aa6.62□□□□□ -1.35
VPS29-208ENST00000550267 CLPSL2Q6UWE3 100 aa6.62□□□□□ -1.35
VPS29-208ENST00000550267 C5orf17Q8NAS9 161 aa6.62□□□□□ -1.35
VPS29-208ENST00000550267 RPL36ALQ969Q0 106 aaKnown RBP6.62□□□□□ -1.35
VPS29-208ENST00000550267 IL36BQ9NZH7 164 aa6.62□□□□□ -1.35
VPS29-208ENST00000550267 KIF25-AS1Q9Y6Z4 181 aa6.62□□□□□ -1.35
VPS29-208ENST00000550267 K7EQM0 130 aa6.61□□□□□ -1.35
VPS29-208ENST00000550267 RAB2AP61019 212 aa6.61□□□□□ -1.35
VPS29-208ENST00000550267 SCGB1C1Q8TD33 95 aa6.61□□□□□ -1.35
VPS29-208ENST00000550267 SMIM3Q9BZL3 60 aa6.61□□□□□ -1.35
VPS29-208ENST00000550267 LPAP08519 4548 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 TRBV7-3A0A075B6L6 115 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 IGHV3-64A0A075B6Q5 118 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 A0A0J9YXV3 536 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 TRBV10-1A0A0K0K1A3 114 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 B4DEV8 164 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 ARMS2P0C7Q2 107 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 ARL14EPLP0DKL9 152 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 KRTAP10-8P60410 259 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 CNBPP62633 177 aaKnown RBP6.6□□□□□ -1.35
VPS29-208ENST00000550267 OR11H4Q8NGC9 324 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 SPACA4Q8TDM5 124 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 RNF185Q96GF1 192 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 SFRP2Q96HF1 295 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 CHCHD5Q9BSY4 110 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 EPDR1Q9UM22 224 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 HSPB11Q9Y547 144 aa6.6□□□□□ -1.35
VPS29-208ENST00000550267 hDV102S1A0JD36 115 aa6.59□□□□□ -1.35
VPS29-208ENST00000550267 GRIFINA4D1Z8 144 aa6.59□□□□□ -1.35
VPS29-208ENST00000550267 FABP5P3A8MUU1 101 aa6.59□□□□□ -1.35
VPS29-208ENST00000550267 PTTG1O95997 202 aa6.59□□□□□ -1.35
VPS29-208ENST00000550267 SAPCD1Q5SSQ6 148 aa6.59□□□□□ -1.35
VPS29-208ENST00000550267 WDR73Q6P4I2 378 aa6.59□□□□□ -1.35
VPS29-208ENST00000550267 CLRN3Q8NCR9 226 aa6.59□□□□□ -1.35
VPS29-208ENST00000550267 C7orf33Q8WU49 177 aa6.59□□□□□ -1.35
VPS29-208ENST00000550267 PRR34Q9NV39 138 aa6.59□□□□□ -1.35
VPS29-208ENST00000550267 PLAC8Q9NZF1 115 aa6.59□□□□□ -1.35
VPS29-208ENST00000550267 TRAV34A0A0B4J273 112 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms