RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 SNURFLB1AK76 121 aa9.19□□□□□ -0.94
CDX2-202ENST00000548877 K7EP13 123 aa9.19□□□□□ -0.94
CDX2-202ENST00000548877 NXPH4O95158 308 aa9.19□□□□□ -0.94
CDX2-202ENST00000548877 P01737 135 aa9.19□□□□□ -0.94
CDX2-202ENST00000548877 DNAH10OSP0CZ25 163 aa9.19□□□□□ -0.94
CDX2-202ENST00000548877 COX8CQ7Z4L0 72 aa9.19□□□□□ -0.94
CDX2-202ENST00000548877 RNASE7Q9H1E1 156 aaKnown RBP9.19□□□□□ -0.94
CDX2-202ENST00000548877 SMIM27A0A1W2PRY6 76 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 FAM231BA6NCW3 169 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 M0R3E3 92 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 IGLV2-11P01706 119 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 KIR3DS1Q14943 382 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 GFI1BQ5VTD9 330 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 WDR73Q6P4I2 378 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 Q6ZTI0 123 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 NUDT10Q8NFP7 164 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 TSKUQ8WUA8 353 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 NUDT11Q96G61 164 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 GFRA4Q9GZZ7 299 aa9.18□□□□□ -0.94
CDX2-202ENST00000548877 RPP21Q9H633 154 aaKnown RBP9.18□□□□□ -0.94
CDX2-202ENST00000548877 XKRY2A2RUG3 117 aa9.17□□□□□ -0.94
CDX2-202ENST00000548877 MT-ND6P03923 174 aa9.17□□□□□ -0.94
CDX2-202ENST00000548877 PRR27Q6MZM9 219 aa9.17□□□□□ -0.94
CDX2-202ENST00000548877 RASL11AQ6T310 242 aa9.17□□□□□ -0.94
CDX2-202ENST00000548877 NHLRC2Q8NBF2 726 aa9.17□□□□□ -0.94
CDX2-202ENST00000548877 NAT8BQ9UHF3 227 aa9.17□□□□□ -0.94
CDX2-202ENST00000548877 UBR4Q5T4S7 5183 aa9.17□□□□□ -0.94
CDX2-202ENST00000548877 TRAV9-2A0A087WT02 112 aa9.16□□□□□ -0.94
CDX2-202ENST00000548877 TRAV8-1A0A0A6YYK1 113 aa9.16□□□□□ -0.94
CDX2-202ENST00000548877 C19orf71A6NCJ1 209 aa9.16□□□□□ -0.94
CDX2-202ENST00000548877 TMEM78Q5T7P6 136 aa9.16□□□□□ -0.94
CDX2-202ENST00000548877 SERTAD4-AS1Q5TG53 156 aa9.16□□□□□ -0.94
CDX2-202ENST00000548877 Q6AWC8 147 aa9.16□□□□□ -0.94
CDX2-202ENST00000548877 ATP5L2Q7Z4Y8 100 aa9.16□□□□□ -0.94
CDX2-202ENST00000548877 ODF3Q96PU9 254 aa9.16□□□□□ -0.94
CDX2-202ENST00000548877 LENEPQ9Y5L5 61 aa9.16□□□□□ -0.94
CDX2-202ENST00000548877 LOC105371267A0A1B0GV96 52 aa9.15□□□□□ -0.94
CDX2-202ENST00000548877 NPIPB6E9PJ23 425 aa9.15□□□□□ -0.94
CDX2-202ENST00000548877 ZNF324O75467 553 aaPredicted RBP9.15□□□□□ -0.94
CDX2-202ENST00000548877 TRGC2P03986 189 aa9.15□□□□□ -0.94
CDX2-202ENST00000548877 SMUG1Q53HV7 270 aa9.15□□□□□ -0.94
CDX2-202ENST00000548877 FAM162BQ5T6X4 162 aa9.15□□□□□ -0.94
CDX2-202ENST00000548877 C11orf72Q8NBR9 251 aa9.15□□□□□ -0.94
CDX2-202ENST00000548877 SGK494Q96LW2 274 aa9.15□□□□□ -0.94
CDX2-202ENST00000548877 LINC00467Q9BRT7 94 aa9.15□□□□□ -0.94
CDX2-202ENST00000548877 ICOSQ9Y6W8 199 aa9.15□□□□□ -0.94
CDX2-202ENST00000548877 IGKV2-40A0A087WW87 121 aaPredicted RBP9.14□□□□□ -0.95
CDX2-202ENST00000548877 IGKV2D-40P01614 121 aaPredicted RBP9.14□□□□□ -0.95
CDX2-202ENST00000548877 RPS20P60866 119 aaKnown RBP9.14□□□□□ -0.95
CDX2-202ENST00000548877 LYPD5Q6UWN5 251 aa9.14□□□□□ -0.95
CDX2-202ENST00000548877 C9orf47Q6ZRZ4 202 aa9.14□□□□□ -0.95
CDX2-202ENST00000548877 ZFP82Q8N141 532 aa9.14□□□□□ -0.95
CDX2-202ENST00000548877 NTN5Q8WTR8 489 aaPredicted RBP9.14□□□□□ -0.95
CDX2-202ENST00000548877 LINC00477Q96M19 166 aa9.14□□□□□ -0.95
CDX2-202ENST00000548877 GNB1LQ9BYB4 327 aa9.14□□□□□ -0.95
CDX2-202ENST00000548877 MSRB1Q9NZV6 116 aa9.14□□□□□ -0.95
CDX2-202ENST00000548877 TRAPPC1Q9Y5R8 145 aa9.14□□□□□ -0.95
CDX2-202ENST00000548877 TRGV2A0A075B6R0 118 aa9.13□□□□□ -0.95
CDX2-202ENST00000548877 TRBV7-9A0A0J9YWB2 115 aa9.13□□□□□ -0.95
CDX2-202ENST00000548877 S100A8P05109 93 aa9.13□□□□□ -0.95
CDX2-202ENST00000548877 ZNF138P52744 262 aa9.13□□□□□ -0.95
CDX2-202ENST00000548877 OR2D3Q8NGH3 330 aa9.13□□□□□ -0.95
CDX2-202ENST00000548877 ZC2HC1AQ96GY0 325 aa9.13□□□□□ -0.95
CDX2-202ENST00000548877 TRAV12-3A0A0B4J271 114 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 A0A1B0GW15 77 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 PRAC2D3DTV9 90 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 PAX4O43316 350 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 SPINK4O60575 86 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 HLA-DQA1P01909 254 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 PRB4P10163 310 aaPredicted RBP9.12□□□□□ -0.95
CDX2-202ENST00000548877 HAMPP81172 84 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 SLAQ13239 276 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 BORCS7Q96B45 105 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 VGLL1Q99990 258 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 PRO0255Q9UI72 69 aa9.12□□□□□ -0.95
CDX2-202ENST00000548877 LRCOL1A6NCL2 159 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 FABP5P3A8MUU1 101 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIGD1CA8MV81 97 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST1H2BKO60814 126 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST1H2BJP06899 126 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST1H2BOP23527 126 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST1H2BBP33778 126 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 LEPP41159 167 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 FOXA3P55318 350 aaPredicted RBP9.11□□□□□ -0.95
CDX2-202ENST00000548877 TCL1AP56279 114 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST1H2BDP58876 126 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST1H2BCP62807 126 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 MRPL23Q16540 153 aaKnown RBP9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST2H2BEQ16778 126 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 ANXA2RQ3ZCQ2 193 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST1H2BHQ93079 126 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST1H2BNQ99877 126 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 HIST1H2BMQ99879 126 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 GSN-AS1Q9NRJ2 163 aa9.11□□□□□ -0.95
CDX2-202ENST00000548877 LRP1Q07954 4544 aaKnown RBP9.11□□□□□ -0.95
CDX2-202ENST00000548877 IGLV5-52A0A0A0MRZ9 124 aa9.1□□□□□ -0.95
CDX2-202ENST00000548877 C5orf52A6NGY3 159 aa9.1□□□□□ -0.95
CDX2-202ENST00000548877 PHOX2AO14813 284 aa9.1□□□□□ -0.95
CDX2-202ENST00000548877 PLA2G1BP04054 148 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms