RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 F6UB75 175 aa11.02□□□□□ -0.64
LIMS1-215ENST00000544547 IGHV3-53P01767 116 aa11.02□□□□□ -0.64
LIMS1-215ENST00000544547 NDUFA11Q86Y39 141 aa11.02□□□□□ -0.64
LIMS1-215ENST00000544547 MUSTN1Q8IVN3 82 aa11.02□□□□□ -0.64
LIMS1-215ENST00000544547 WDFY4Q6ZS81 3184 aa11.02□□□□□ -0.65
LIMS1-215ENST00000544547 LINC01620Q4KN68 170 aa11.02□□□□□ -0.65
LIMS1-215ENST00000544547 ATP6V0E2Q8NHE4 81 aa11.02□□□□□ -0.65
LIMS1-215ENST00000544547 TLN2Q9Y4G6 2542 aa11.02□□□□□ -0.65
LIMS1-215ENST00000544547 TEX22C9J3V5 150 aa11.02□□□□□ -0.65
LIMS1-215ENST00000544547 RPL36AP83881 106 aaKnown RBP11.02□□□□□ -0.65
LIMS1-215ENST00000544547 ZNF415Q09FC8 603 aa11.02□□□□□ -0.65
LIMS1-215ENST00000544547 RPL36ALQ969Q0 106 aaKnown RBP11.02□□□□□ -0.65
LIMS1-215ENST00000544547 SYNJ2BPP57105 145 aa11.01□□□□□ -0.65
LIMS1-215ENST00000544547 MAPK1IP1LQ8NDC0 245 aa11.01□□□□□ -0.65
LIMS1-215ENST00000544547 BAALCQ8WXS3 180 aa11.01□□□□□ -0.65
LIMS1-215ENST00000544547 A0A096LNJ9 63 aa11.01□□□□□ -0.65
LIMS1-215ENST00000544547 DEFB1P60022 68 aa11.01□□□□□ -0.65
LIMS1-215ENST00000544547 ZFYVE26Q68DK2 2539 aa11.01□□□□□ -0.65
LIMS1-215ENST00000544547 FAM236AA0A1B0GUQ0 79 aa11□□□□□ -0.65
LIMS1-215ENST00000544547 FAM236BA0A1B0GV22 79 aa11□□□□□ -0.65
LIMS1-215ENST00000544547 RPL35AP18077 110 aaKnown RBP11□□□□□ -0.65
LIMS1-215ENST00000544547 TEX49A0A1B0GTD5 131 aa11□□□□□ -0.65
LIMS1-215ENST00000544547 DAZ1Q9NQZ3 744 aaKnown RBP11□□□□□ -0.65
LIMS1-215ENST00000544547 RBAKDNA6NC62 111 aa11□□□□□ -0.65
LIMS1-215ENST00000544547 INS-IGF2F8WCM5 200 aa11□□□□□ -0.65
LIMS1-215ENST00000544547 ATP6V0E1O15342 81 aa11□□□□□ -0.65
LIMS1-215ENST00000544547 HHLA3Q9XRX5 114 aa11□□□□□ -0.65
LIMS1-215ENST00000544547 KNCNA6PVL3 124 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 LINC00158P58513 81 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 NDUFA12Q9UI09 145 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 JMJD1CQ15652 2540 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 RNF223E7ERA6 249 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 IGFL3Q6UXB1 125 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 Q8N1Y9 231 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 CCDC179H3BU77 68 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 CFAP126Q5VTH2 177 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 SETD2Q9BYW2 2564 aaPredicted RBP10.99□□□□□ -0.65
LIMS1-215ENST00000544547 MSMBP08118 114 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 GATA3P23771 443 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 UBE2E1P51965 193 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 DEFB131AP59861 70 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 TMEM86BQ8N661 226 aa10.99□□□□□ -0.65
LIMS1-215ENST00000544547 CRPP02741 224 aa10.98□□□□□ -0.65
LIMS1-215ENST00000544547 MORN3Q6PF18 240 aaPredicted RBP10.98□□□□□ -0.65
LIMS1-215ENST00000544547 PHLDA1Q8WV24 401 aaPredicted RBP10.98□□□□□ -0.65
LIMS1-215ENST00000544547 WI2-2373I1.2A0A1W2PRP0 233 aa10.98□□□□□ -0.65
LIMS1-215ENST00000544547 TRAV4A0A0B4J268 109 aa10.98□□□□□ -0.65
LIMS1-215ENST00000544547 CMC4P56277 68 aaPredicted RBP10.98□□□□□ -0.65
LIMS1-215ENST00000544547 TMEM141Q96I45 108 aa10.98□□□□□ -0.65
LIMS1-215ENST00000544547 COL5A1P20908 1838 aaPredicted RBP10.98□□□□□ -0.65
LIMS1-215ENST00000544547 DSCAMO60469 2012 aa10.98□□□□□ -0.65
LIMS1-215ENST00000544547 LY6G5BQ8NDX9 201 aa10.98□□□□□ -0.65
LIMS1-215ENST00000544547 CTSGP08311 255 aa10.97□□□□□ -0.65
LIMS1-215ENST00000544547 SVIPQ8NHG7 77 aa10.97□□□□□ -0.65
LIMS1-215ENST00000544547 RNF185Q96GF1 192 aa10.97□□□□□ -0.65
LIMS1-215ENST00000544547 A0A0J9YXV3 536 aa10.97□□□□□ -0.65
LIMS1-215ENST00000544547 FAM223BA6NKX1 122 aa10.97□□□□□ -0.65
LIMS1-215ENST00000544547 IGLC6P0CF74 106 aa10.97□□□□□ -0.65
LIMS1-215ENST00000544547 FAM223AQ8IWN6 122 aa10.97□□□□□ -0.65
LIMS1-215ENST00000544547 LINC01356Q8N9X3 169 aa10.97□□□□□ -0.65
LIMS1-215ENST00000544547 SPANXA1Q9NS26 97 aa10.97□□□□□ -0.65
LIMS1-215ENST00000544547 TRAV12-1A0A0B4J245 112 aa10.96□□□□□ -0.65
LIMS1-215ENST00000544547 OPRPNQ99935 248 aaPredicted RBP10.96□□□□□ -0.65
LIMS1-215ENST00000544547 USP34Q70CQ2 3546 aa10.96□□□□□ -0.65
LIMS1-215ENST00000544547 TRAV12-2A0A075B6T6 113 aa10.96□□□□□ -0.65
LIMS1-215ENST00000544547 CLEC2BQ92478 149 aa10.96□□□□□ -0.65
LIMS1-215ENST00000544547 TRBV6-1A0A0K0K1D8 114 aa10.96□□□□□ -0.66
LIMS1-215ENST00000544547 C11orf68Q9H3H3 251 aaKnown RBP10.96□□□□□ -0.66
LIMS1-215ENST00000544547 KLK9Q9UKQ9 250 aa10.96□□□□□ -0.66
LIMS1-215ENST00000544547 U3KQK5 164 aa10.96□□□□□ -0.66
LIMS1-215ENST00000544547 PAX4O43316 350 aa10.95□□□□□ -0.66
LIMS1-215ENST00000544547 DAND5Q8N907 189 aa10.95□□□□□ -0.66
LIMS1-215ENST00000544547 GATD1Q8NB37 220 aa10.95□□□□□ -0.66
LIMS1-215ENST00000544547 TRAV13-1A0A0B4J241 112 aa10.95□□□□□ -0.66
LIMS1-215ENST00000544547 FAM110DQ8TAY7 271 aaPredicted RBP10.95□□□□□ -0.66
LIMS1-215ENST00000544547 TOMM6Q96B49 74 aa10.95□□□□□ -0.66
LIMS1-215ENST00000544547 DEFB130BP0DP73 79 aa10.94□□□□□ -0.66
LIMS1-215ENST00000544547 DEFB130AP0DP74 79 aa10.94□□□□□ -0.66
LIMS1-215ENST00000544547 JPT2Q9H910 190 aa10.94□□□□□ -0.66
LIMS1-215ENST00000544547 IGFL2Q6UWQ7 119 aa10.94□□□□□ -0.66
LIMS1-215ENST00000544547 INSP01308 110 aa10.94□□□□□ -0.66
LIMS1-215ENST00000544547 PRIMA1Q86XR5 153 aa10.94□□□□□ -0.66
LIMS1-215ENST00000544547 FRYLO94915 3013 aa10.94□□□□□ -0.66
LIMS1-215ENST00000544547 IGHV1-69DA0A0B4J2H0 117 aa10.94□□□□□ -0.66
LIMS1-215ENST00000544547 GHRHP01286 108 aa10.94□□□□□ -0.66
LIMS1-215ENST00000544547 IGHV1-69P01742 117 aa10.94□□□□□ -0.66
LIMS1-215ENST00000544547 SPINK13Q1W4C9 94 aa10.93□□□□□ -0.66
LIMS1-215ENST00000544547 NFE4Q86UQ8 179 aa10.93□□□□□ -0.66
LIMS1-215ENST00000544547 RPL32P62910 135 aaKnown RBP10.93□□□□□ -0.66
LIMS1-215ENST00000544547 S100A7L2Q5SY68 101 aa10.93□□□□□ -0.66
LIMS1-215ENST00000544547 XCL2Q9UBD3 114 aa10.93□□□□□ -0.66
LIMS1-215ENST00000544547 NBEAQ8NFP9 2946 aa10.93□□□□□ -0.66
LIMS1-215ENST00000544547 BUB3O43684 328 aa10.93□□□□□ -0.66
LIMS1-215ENST00000544547 REV3LO60673 3130 aa10.92□□□□□ -0.66
LIMS1-215ENST00000544547 IGLV11-55A0A075B6I3 123 aa10.92□□□□□ -0.66
LIMS1-215ENST00000544547 C6orf226Q5I0X4 101 aa10.92□□□□□ -0.66
LIMS1-215ENST00000544547 TRBV7-3A0A075B6L6 115 aa10.92□□□□□ -0.66
LIMS1-215ENST00000544547 IGHV3-38A0A0C4DH36 116 aa10.92□□□□□ -0.66
LIMS1-215ENST00000544547 GRNP28799 593 aaKnown RBP10.92□□□□□ -0.66
LIMS1-215ENST00000544547 ANKRD11Q6UB99 2663 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms