RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	ORM1	P02763	201 aa		11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	SMCP	P49901	116 aa	Predicted RBP	11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	DEFB1	P60022	68 aa		11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	FHL3	Q13643	280 aa		11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	TWIST1	Q15672	202 aa		11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	MAPKAPK5-AS1	Q8N8E1	139 aa		11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	HIST1H4G	Q99525	98 aa		11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	ATP5L	O75964	103 aa		11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	TMEM158	Q8WZ71	300 aa		11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	ACAN	P16112	2415 aa		11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	SON	P18583	2426 aa	Known RBP	11.41	□□□□□ -0.58
CHFR-223	ENST00000544268	AGRN	O00468	2067 aa		11.4	□□□□□ -0.58
CHFR-223	ENST00000544268	TRBV12-3	P01733	135 aa		11.4	□□□□□ -0.58
CHFR-223	ENST00000544268	LEP	P41159	167 aa		11.4	□□□□□ -0.58
CHFR-223	ENST00000544268	FOXC2	Q99958	501 aa		11.4	□□□□□ -0.58
CHFR-223	ENST00000544268	NOTCH2	Q04721	2471 aa		11.4	□□□□□ -0.58
CHFR-223	ENST00000544268	SPRY2	O43597	315 aa		11.4	□□□□□ -0.58
CHFR-223	ENST00000544268	IGHV4-59	P01825	116 aa		11.4	□□□□□ -0.58
CHFR-223	ENST00000544268	C11orf21	Q9P2W6	132 aa		11.4	□□□□□ -0.58
CHFR-223	ENST00000544268	FABP5P3	A8MUU1	101 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	LINC01619	G3V211	115 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	GATA1	P15976	413 aa	Predicted RBP	11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	DLX4	Q92988	240 aa	Predicted RBP	11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	MAP1LC3A	Q9H492	121 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	SETX	Q7Z333	2677 aa	Known RBP	11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	TRBV7-3	A0A075B6L6	115 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	GAGE12J	A6NER3	117 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	GAGE7	O76087	117 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	GAGE12F	P0CL80	117 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	GAGE12G	P0CL81	117 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	GAGE12I	P0CL82	117 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	GAGE4	Q13068	117 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	ZFAND6	Q6FIF0	208 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	MORN3	Q6PF18	240 aa	Predicted RBP	11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	PPDPFL	Q8WWR9	84 aa		11.39	□□□□□ -0.59
CHFR-223	ENST00000544268	TRAV8-2	A0A0B4J237	113 aa		11.38	□□□□□ -0.59
CHFR-223	ENST00000544268	HOXA3	O43365	443 aa	Predicted RBP	11.38	□□□□□ -0.59
CHFR-223	ENST00000544268	BLCAP	P62952	87 aa		11.38	□□□□□ -0.59
CHFR-223	ENST00000544268	MYO9A	B2RTY4	2548 aa		11.38	□□□□□ -0.59
CHFR-223	ENST00000544268	IGF1	P05019	195 aa		11.38	□□□□□ -0.59
CHFR-223	ENST00000544268		Q6ZS46	218 aa		11.38	□□□□□ -0.59
CHFR-223	ENST00000544268	PRSS29P	A6NIE9	313 aa		11.37	□□□□□ -0.59
CHFR-223	ENST00000544268	CCDC179	H3BU77	68 aa		11.37	□□□□□ -0.59
CHFR-223	ENST00000544268	C9orf139	Q6ZV77	190 aa		11.37	□□□□□ -0.59
CHFR-223	ENST00000544268	AGPAT4-IT1	Q9H0P7	198 aa		11.37	□□□□□ -0.59
CHFR-223	ENST00000544268	TMEM160	Q9NX00	188 aa		11.37	□□□□□ -0.59
CHFR-223	ENST00000544268	IGLC6	P0CF74	106 aa		11.37	□□□□□ -0.59
CHFR-223	ENST00000544268	UNQ9165/PRO28630	Q6UXU0	137 aa		11.37	□□□□□ -0.59
CHFR-223	ENST00000544268	TEX29	Q8N6K0	151 aa		11.37	□□□□□ -0.59
CHFR-223	ENST00000544268	NXT2	Q9NPJ8	142 aa	Known RBP	11.37	□□□□□ -0.59
CHFR-223	ENST00000544268	IGKV3D-20	A0A0C4DH25	116 aa		11.36	□□□□□ -0.59
CHFR-223	ENST00000544268	CARD19	Q96LW7	228 aa		11.36	□□□□□ -0.59
CHFR-223	ENST00000544268	TRAV41	A0A0B4J266	112 aa		11.36	□□□□□ -0.59
CHFR-223	ENST00000544268	RNF185	Q96GF1	192 aa		11.36	□□□□□ -0.59
CHFR-223	ENST00000544268	IGHV3-11	P01762	117 aa		11.35	□□□□□ -0.59
CHFR-223	ENST00000544268	IGHG2	P01859	326 aa		11.35	□□□□□ -0.59
CHFR-223	ENST00000544268	C19orf54	Q5BKX5	351 aa		11.35	□□□□□ -0.59
CHFR-223	ENST00000544268	TEN1	Q86WV5	123 aa		11.35	□□□□□ -0.59
CHFR-223	ENST00000544268	IGKV3-7	A0A075B6H7	116 aa		11.35	□□□□□ -0.59
CHFR-223	ENST00000544268	TRGV3	P03979	118 aa		11.35	□□□□□ -0.59
CHFR-223	ENST00000544268	COX8C	Q7Z4L0	72 aa		11.35	□□□□□ -0.59
CHFR-223	ENST00000544268	SCGB2A1	O75556	95 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	CRIP2	P52943	208 aa	Predicted RBP	11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	KRTAP1-1	Q07627	177 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	ANXA2R	Q3ZCQ2	193 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	PRR9	Q5T870	116 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268		Q6YL49	198 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	C20orf173	Q96LM9	149 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	MRPL35	Q9NZE8	188 aa	Known RBP	11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	TRAV26-2	A0A0B4J265	109 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	TMEM262	E9PQX1	116 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	KLK9	Q2XQG4	91 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	KLK15	Q9H2R5	256 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	KLK9	Q9UKQ9	250 aa		11.34	□□□□□ -0.59
CHFR-223	ENST00000544268	ZNF688	P0C7X2	276 aa		11.33	□□□□□ -0.6
CHFR-223	ENST00000544268	EDN2	P20800	178 aa		11.33	□□□□□ -0.6
CHFR-223	ENST00000544268	EEF1AKMT3	Q96AZ1	226 aa		11.33	□□□□□ -0.6
CHFR-223	ENST00000544268	PSMB2	P49721	201 aa		11.33	□□□□□ -0.6
CHFR-223	ENST00000544268	SMIM9	A6NGZ8	99 aa		11.32	□□□□□ -0.6
CHFR-223	ENST00000544268	TNFRSF6B	O95407	300 aa		11.32	□□□□□ -0.6
CHFR-223	ENST00000544268	METTL26	Q96S19	204 aa		11.32	□□□□□ -0.6
CHFR-223	ENST00000544268	MYMX	A0A1B0GTQ4	84 aa		11.31	□□□□□ -0.6
CHFR-223	ENST00000544268	SRD5A1	P18405	259 aa		11.31	□□□□□ -0.6
CHFR-223	ENST00000544268	ANK3	Q12955	4377 aa	Known RBP	11.31	□□□□□ -0.6
CHFR-223	ENST00000544268	PLN	P26678	52 aa		11.31	□□□□□ -0.6
CHFR-223	ENST00000544268	MYOZ3	Q8TDC0	251 aa		11.31	□□□□□ -0.6
CHFR-223	ENST00000544268	RHOD	O00212	210 aa		11.3	□□□□□ -0.6
CHFR-223	ENST00000544268	GPHB5	Q86YW7	130 aa		11.3	□□□□□ -0.6
CHFR-223	ENST00000544268	SBSPON	Q8IVN8	264 aa		11.3	□□□□□ -0.6
CHFR-223	ENST00000544268		Q8N8P6	123 aa		11.3	□□□□□ -0.6
CHFR-223	ENST00000544268		F6UB75	175 aa		11.3	□□□□□ -0.6
CHFR-223	ENST00000544268	UBE2D3	P61077	147 aa		11.3	□□□□□ -0.6
CHFR-223	ENST00000544268	UBE2D2	P62837	147 aa		11.3	□□□□□ -0.6
CHFR-223	ENST00000544268	LYRM7	Q5U5X0	104 aa		11.3	□□□□□ -0.6
CHFR-223	ENST00000544268	DUX5	Q96PT3	197 aa		11.3	□□□□□ -0.6
CHFR-223	ENST00000544268	OTOG	Q6ZRI0	2925 aa		11.3	□□□□□ -0.6
CHFR-223	ENST00000544268	TRBV7-1	A0A0A6YYK4	115 aa		11.29	□□□□□ -0.6
CHFR-223	ENST00000544268	LOC107984156	A0A0G2JMH3	177 aa		11.29	□□□□□ -0.6
CHFR-223	ENST00000544268	LINC01549	A6NIU2	74 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms