RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ZNF664Q8N3J9 261 aa10.8□□□□□ -0.68
USP3-204ENST00000540797 A0A0J9YX75 114 aa10.8□□□□□ -0.68
USP3-204ENST00000540797 EDA2RQ9HAV5 297 aa10.8□□□□□ -0.68
USP3-204ENST00000540797 KLK5Q9Y337 293 aaPredicted RBP10.8□□□□□ -0.68
USP3-204ENST00000540797 J3QQQ9 107 aa10.79□□□□□ -0.68
USP3-204ENST00000540797 Q6ZSV7 163 aa10.79□□□□□ -0.68
USP3-204ENST00000540797 IGLC2P0DOY2 106 aa10.79□□□□□ -0.68
USP3-204ENST00000540797 C5orf38Q86SI9 138 aa10.79□□□□□ -0.68
USP3-204ENST00000540797 UBE2BP63146 152 aa10.78□□□□□ -0.68
USP3-204ENST00000540797 AMTNQ6UX39 209 aa10.78□□□□□ -0.68
USP3-204ENST00000540797 Q6ZWC4 215 aa10.78□□□□□ -0.68
USP3-204ENST00000540797 C20orf144Q9BQM9 153 aa10.78□□□□□ -0.68
USP3-204ENST00000540797 POLR3KQ9Y2Y1 108 aaPredicted RBP10.78□□□□□ -0.68
USP3-204ENST00000540797 ZNF503Q96F45 646 aa10.78□□□□□ -0.68
USP3-204ENST00000540797 IGLV10-54A0A075B6I4 117 aa10.78□□□□□ -0.68
USP3-204ENST00000540797 TNRC6AQ8NDV7 1962 aaKnown RBP10.78□□□□□ -0.68
USP3-204ENST00000540797 SHISA2Q6UWI4 295 aa10.78□□□□□ -0.68
USP3-204ENST00000540797 PTPRSQ13332 1948 aa10.77□□□□□ -0.68
USP3-204ENST00000540797 SCRT2Q9NQ03 307 aa10.77□□□□□ -0.68
USP3-204ENST00000540797 P0C879 139 aa10.77□□□□□ -0.69
USP3-204ENST00000540797 MTURNQ8N3F0 131 aa10.77□□□□□ -0.69
USP3-204ENST00000540797 HIVEP3Q5T1R4 2406 aa10.77□□□□□ -0.69
USP3-204ENST00000540797 CDSNQ15517 529 aa10.77□□□□□ -0.69
USP3-204ENST00000540797 C1orf229Q6ZS94 237 aaPredicted RBP10.77□□□□□ -0.69
USP3-204ENST00000540797 DKK2Q9UBU2 259 aa10.77□□□□□ -0.69
USP3-204ENST00000540797 CHD3Q12873 2000 aaKnown RBP10.77□□□□□ -0.69
USP3-204ENST00000540797 CRIP3Q6Q6R5 217 aa10.77□□□□□ -0.69
USP3-204ENST00000540797 Q6ZPA2 131 aa10.77□□□□□ -0.69
USP3-204ENST00000540797 PRR14LQ5THK1 2151 aa10.76□□□□□ -0.69
USP3-204ENST00000540797 IGKV1D-37A0A075B6S9 117 aa10.76□□□□□ -0.69
USP3-204ENST00000540797 BRWD1-AS2P59051 145 aa10.76□□□□□ -0.69
USP3-204ENST00000540797 LY6LH3BQJ8 138 aa10.76□□□□□ -0.69
USP3-204ENST00000540797 EBI3Q14213 229 aa10.76□□□□□ -0.69
USP3-204ENST00000540797 SLC25A29Q8N8R3 303 aa10.76□□□□□ -0.69
USP3-204ENST00000540797 TRBV7-3A0A075B6L6 115 aa10.76□□□□□ -0.69
USP3-204ENST00000540797 LGALS9O00182 355 aa10.76□□□□□ -0.69
USP3-204ENST00000540797 TMEM263Q8WUH6 116 aaKnown RBP10.76□□□□□ -0.69
USP3-204ENST00000540797 PKIGQ9Y2B9 76 aa10.76□□□□□ -0.69
USP3-204ENST00000540797 ALPK3Q96L96 1907 aa10.76□□□□□ -0.69
USP3-204ENST00000540797 C9JAW5 83 aa10.75□□□□□ -0.69
USP3-204ENST00000540797 CAMK2N2Q96S95 79 aa10.75□□□□□ -0.69
USP3-204ENST00000540797 PLA2G2EQ9NZK7 142 aa10.75□□□□□ -0.69
USP3-204ENST00000540797 IGLL5B9A064 214 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 PIEZO2Q9H5I5 2752 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 ZFP2Q6ZN57 461 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 MED14OSP0DP75 135 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 PCNX3Q9H6A9 2034 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 RPL18AQ02543 176 aaKnown RBP10.74□□□□□ -0.69
USP3-204ENST00000540797 Q9H8V8 135 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 COX7A2LO14548 114 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 DEFB114Q30KQ6 69 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 IL17DQ8TAD2 202 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 ZNF747Q9BV97 191 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 NUP210LQ5VU65 1888 aa10.74□□□□□ -0.69
USP3-204ENST00000540797 TRAV13-2A0A0B4J235 113 aa10.73□□□□□ -0.69
USP3-204ENST00000540797 HIST1H4AP62805 103 aaKnown RBP10.73□□□□□ -0.69
USP3-204ENST00000540797 TNCP24821 2201 aa10.73□□□□□ -0.69
USP3-204ENST00000540797 COX8AP10176 69 aa10.73□□□□□ -0.69
USP3-204ENST00000540797 MDFICQ9P1T7 246 aa10.73□□□□□ -0.69
USP3-204ENST00000540797 TAL2Q16559 108 aa10.73□□□□□ -0.69
USP3-204ENST00000540797 IGLL1P15814 213 aa10.73□□□□□ -0.69
USP3-204ENST00000540797 CRYGBP07316 175 aa10.72□□□□□ -0.69
USP3-204ENST00000540797 C11orf45Q8TAV5 145 aa10.72□□□□□ -0.69
USP3-204ENST00000540797 GAGE2AQ6NT46 116 aa10.72□□□□□ -0.69
USP3-204ENST00000540797 BOD1L2Q8IYS8 172 aa10.72□□□□□ -0.69
USP3-204ENST00000540797 GTSF1Q8WW33 167 aa10.72□□□□□ -0.69
USP3-204ENST00000540797 PRO0255Q9UI72 69 aa10.72□□□□□ -0.69
USP3-204ENST00000540797 C11orf1Q9H5F2 150 aa10.71□□□□□ -0.69
USP3-204ENST00000540797 WNK1Q9H4A3 2382 aa10.71□□□□□ -0.69
USP3-204ENST00000540797 TRBV6-1A0A0K0K1D8 114 aa10.71□□□□□ -0.7
USP3-204ENST00000540797 C10orf99Q6UWK7 81 aa10.71□□□□□ -0.7
USP3-204ENST00000540797 VSIG2Q96IQ7 327 aa10.71□□□□□ -0.7
USP3-204ENST00000540797 FGF6P10767 208 aa10.71□□□□□ -0.7
USP3-204ENST00000540797 TM2D2Q9BX73 214 aa10.71□□□□□ -0.7
USP3-204ENST00000540797 IGLC3P0DOY3 106 aa10.7□□□□□ -0.7
USP3-204ENST00000540797 NAV3Q8IVL0 2385 aa10.7□□□□□ -0.7
USP3-204ENST00000540797 HERV-K104P63124 156 aa10.7□□□□□ -0.7
USP3-204ENST00000540797 MRPL52Q86TS9 123 aaKnown RBP10.7□□□□□ -0.7
USP3-204ENST00000540797 MYO18BQ8IUG5 2567 aa10.7□□□□□ -0.7
USP3-204ENST00000540797 K7EQG2 157 aa10.7□□□□□ -0.7
USP3-204ENST00000540797 TRAV4A0A0B4J268 109 aa10.69□□□□□ -0.7
USP3-204ENST00000540797 A0A0J9YXV3 536 aa10.69□□□□□ -0.7
USP3-204ENST00000540797 EIF4EBP1Q13541 118 aaPredicted RBP10.69□□□□□ -0.7
USP3-204ENST00000540797 PSMG3-AS1Q96PY0 264 aa10.69□□□□□ -0.7
USP3-204ENST00000540797 CTRLP40313 264 aa10.69□□□□□ -0.7
USP3-204ENST00000540797 GAGE2EQ4V326 116 aa10.69□□□□□ -0.7
USP3-204ENST00000540797 ZNF702PQ9H963 129 aa10.69□□□□□ -0.7
USP3-204ENST00000540797 GAGE2DQ9UEU5 116 aa10.69□□□□□ -0.7
USP3-204ENST00000540797 PRO1854Q9UHT4 67 aa10.69□□□□□ -0.7
USP3-204ENST00000540797 SOCS3O14543 225 aa10.68□□□□□ -0.7
USP3-204ENST00000540797 KLK12Q9UKR0 248 aa10.68□□□□□ -0.7
USP3-204ENST00000540797 LINC01006Q8NI28 216 aa10.68□□□□□ -0.7
USP3-204ENST00000540797 HILS1P60008 231 aa10.68□□□□□ -0.7
USP3-204ENST00000540797 TRBV20-1A0A075B6N2 111 aa10.67□□□□□ -0.7
USP3-204ENST00000540797 RPL39P62891 51 aaKnown RBP10.67□□□□□ -0.7
USP3-204ENST00000540797 RPL32P62910 135 aaKnown RBP10.67□□□□□ -0.7
USP3-204ENST00000540797 TIRAPP58753 221 aa10.67□□□□□ -0.7
USP3-204ENST00000540797 OCIAD2Q56VL3 154 aa10.67□□□□□ -0.7
USP3-204ENST00000540797 KRTAP10-9P60411 292 aa10.67□□□□□ -0.7
USP3-204ENST00000540797 CEND1Q8N111 149 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms