RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 UBE2WQ96B02 151 aa8.83□□□□□ -1
SS18-204ENST00000539244 TNFSF18Q9UNG2 199 aa8.83□□□□□ -1
SS18-204ENST00000539244 A0A087WX48 190 aa8.82□□□□□ -1
SS18-204ENST00000539244 TRAV34A0A0B4J273 112 aa8.82□□□□□ -1
SS18-204ENST00000539244 TRBV10-1A0A0K0K1A3 114 aa8.82□□□□□ -1
SS18-204ENST00000539244 B4DEV8 164 aa8.82□□□□□ -1
SS18-204ENST00000539244 KRBOX1C9JBD0 128 aa8.82□□□□□ -1
SS18-204ENST00000539244 ARMS2P0C7Q2 107 aa8.82□□□□□ -1
SS18-204ENST00000539244 CRIP1P50238 77 aa8.82□□□□□ -1
SS18-204ENST00000539244 C14orf177Q52M58 125 aa8.82□□□□□ -1
SS18-204ENST00000539244 Q86TA4 180 aa8.82□□□□□ -1
SS18-204ENST00000539244 OR11H4Q8NGC9 324 aa8.82□□□□□ -1
SS18-204ENST00000539244 SFRP2Q96HF1 295 aa8.82□□□□□ -1
SS18-204ENST00000539244 AQP10Q96PS8 301 aa8.82□□□□□ -1
SS18-204ENST00000539244 ACTR3CQ9C0K3 210 aaPredicted RBP8.82□□□□□ -1
SS18-204ENST00000539244 FAM74A4Q5TZK3 123 aa8.81□□□□□ -1
SS18-204ENST00000539244 PEX7O00628 323 aa8.8□□□□□ -1
SS18-204ENST00000539244 DEFA1P59665 94 aa8.8□□□□□ -1
SS18-204ENST00000539244 DEFA3P59666 94 aa8.8□□□□□ -1
SS18-204ENST00000539244 UBE2D3P61077 147 aa8.8□□□□□ -1
SS18-204ENST00000539244 UBE2D2P62837 147 aa8.8□□□□□ -1
SS18-204ENST00000539244 KCNIP4Q6PIL6 250 aa8.8□□□□□ -1
SS18-204ENST00000539244 OR10G8Q8NGN5 311 aa8.8□□□□□ -1
SS18-204ENST00000539244 HIST1H2BAQ96A08 127 aa8.8□□□□□ -1
SS18-204ENST00000539244 NKX6-2Q9C056 277 aaPredicted RBP8.8□□□□□ -1
SS18-204ENST00000539244 PLA2G2DQ9UNK4 145 aa8.8□□□□□ -1
SS18-204ENST00000539244 TRBV7-3A0A075B6L6 115 aa8.79□□□□□ -1
SS18-204ENST00000539244 A0A087WWL8 130 aa8.79□□□□□ -1
SS18-204ENST00000539244 RPL36AP83881 106 aaKnown RBP8.79□□□□□ -1
SS18-204ENST00000539244 ENHOQ6UWT2 76 aa8.79□□□□□ -1
SS18-204ENST00000539244 RPL36ALQ969Q0 106 aaKnown RBP8.79□□□□□ -1
SS18-204ENST00000539244 ZC2HC1AQ96GY0 325 aa8.79□□□□□ -1
SS18-204ENST00000539244 C1orf43Q9BWL3 253 aa8.79□□□□□ -1
SS18-204ENST00000539244 ZFP30Q9Y2G7 519 aa8.79□□□□□ -1
SS18-204ENST00000539244 PHLDA3Q9Y5J5 127 aa8.79□□□□□ -1
SS18-204ENST00000539244 UBR4Q5T4S7 5183 aa8.79□□□□□ -1
SS18-204ENST00000539244 CTXND1A0A1B0GTU2 59 aa8.78□□□□□ -1
SS18-204ENST00000539244 M0R036 132 aa8.78□□□□□ -1
SS18-204ENST00000539244 SH2D1AO60880 128 aa8.78□□□□□ -1
SS18-204ENST00000539244 IFNA7P01567 189 aa8.78□□□□□ -1
SS18-204ENST00000539244 ZNF726P1Q15940 193 aa8.78□□□□□ -1
SS18-204ENST00000539244 ZNF674Q2M3X9 581 aa8.78□□□□□ -1
SS18-204ENST00000539244 LINC01559Q495D7 138 aa8.78□□□□□ -1
SS18-204ENST00000539244 FAM162BQ5T6X4 162 aa8.78□□□□□ -1
SS18-204ENST00000539244 KRTAP3-3Q9BYR6 98 aa8.78□□□□□ -1
SS18-204ENST00000539244 KRTAP3-2Q9BYR7 98 aa8.78□□□□□ -1
SS18-204ENST00000539244 TRBV6-8A0A0A6YYG3 113 aa8.77□□□□□ -1.01
SS18-204ENST00000539244 GRIFINA4D1Z8 144 aa8.77□□□□□ -1.01
SS18-204ENST00000539244 FAM74A7A6NL05 159 aa8.77□□□□□ -1.01
SS18-204ENST00000539244 TPT1P13693 172 aaKnown RBP8.77□□□□□ -1.01
SS18-204ENST00000539244 RPL37AP61513 92 aaKnown RBP8.77□□□□□ -1.01
SS18-204ENST00000539244 ZFP82Q8N141 532 aa8.77□□□□□ -1.01
SS18-204ENST00000539244 TRBV6-1A0A0K0K1D8 114 aa8.76□□□□□ -1.01
SS18-204ENST00000539244 M0R381 172 aa8.76□□□□□ -1.01
SS18-204ENST00000539244 CRPP02741 224 aa8.76□□□□□ -1.01
SS18-204ENST00000539244 HNRNPA3P51991 378 aaKnown RBP8.76□□□□□ -1.01
SS18-204ENST00000539244 UBE2G2P60604 165 aa8.76□□□□□ -1.01
SS18-204ENST00000539244 MPV17L2Q567V2 206 aa8.76□□□□□ -1.01
SS18-204ENST00000539244 DGAT2L7PQ6IED9 249 aa8.76□□□□□ -1.01
SS18-204ENST00000539244 DAZAP1Q96EP5 407 aaKnown RBP8.76□□□□□ -1.01
SS18-204ENST00000539244 FMC1Q96HJ9 113 aa8.76□□□□□ -1.01
SS18-204ENST00000539244 ALG5Q9Y673 324 aa8.76□□□□□ -1.01
SS18-204ENST00000539244 USP17L23D6RBM5 183 aa8.75□□□□□ -1.01
SS18-204ENST00000539244 TMEM262E9PQX1 116 aa8.75□□□□□ -1.01
SS18-204ENST00000539244 RAB4BP61018 213 aa8.75□□□□□ -1.01
SS18-204ENST00000539244 PKIAP61925 76 aa8.75□□□□□ -1.01
SS18-204ENST00000539244 MIAQ16674 131 aa8.75□□□□□ -1.01
SS18-204ENST00000539244 PRR27Q6MZM9 219 aa8.75□□□□□ -1.01
SS18-204ENST00000539244 C15orf54Q8N8G6 183 aa8.75□□□□□ -1.01
SS18-204ENST00000539244 C9orf163Q8N9P6 203 aa8.75□□□□□ -1.01
SS18-204ENST00000539244 NEXN-AS1Q8NBZ9 246 aa8.75□□□□□ -1.01
SS18-204ENST00000539244 LTAP01374 205 aa8.74□□□□□ -1.01
SS18-204ENST00000539244 PRSS1P07477 247 aa8.74□□□□□ -1.01
SS18-204ENST00000539244 RPL7L1Q6DKI1 246 aaKnown RBP8.74□□□□□ -1.01
SS18-204ENST00000539244 TCEAL7Q9BRU2 100 aa8.74□□□□□ -1.01
SS18-204ENST00000539244 TMSB15BA0A087X1C1 80 aa8.73□□□□□ -1.01
SS18-204ENST00000539244 ANGP03950 147 aaKnown RBP8.73□□□□□ -1.01
SS18-204ENST00000539244 FHITP49789 147 aa8.73□□□□□ -1.01
SS18-204ENST00000539244 UBE2G1P62253 170 aa8.73□□□□□ -1.01
SS18-204ENST00000539244 Q5BKY6 102 aa8.73□□□□□ -1.01
SS18-204ENST00000539244 PRR34Q9NV39 138 aa8.73□□□□□ -1.01
SS18-204ENST00000539244 BORCS7-ASMTA0A0B4J1R7 106 aa8.72□□□□□ -1.01
SS18-204ENST00000539244 A6NHS1 94 aa8.72□□□□□ -1.01
SS18-204ENST00000539244 PTTG1O95997 202 aa8.72□□□□□ -1.01
SS18-204ENST00000539244 HLA-DQA1P01909 254 aa8.72□□□□□ -1.01
SS18-204ENST00000539244 CXCL1P09341 107 aa8.72□□□□□ -1.01
SS18-204ENST00000539244 KRTAP26-1Q6PEX3 210 aa8.72□□□□□ -1.01
SS18-204ENST00000539244 INO80EQ8NBZ0 244 aaPredicted RBP8.72□□□□□ -1.01
SS18-204ENST00000539244 VAX2Q9UIW0 290 aa8.72□□□□□ -1.01
SS18-204ENST00000539244 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.72□□□□□ -1.01
SS18-204ENST00000539244 MT1HL1P0DM35 61 aa8.71□□□□□ -1.02
SS18-204ENST00000539244 RPL19P84098 196 aaKnown RBP8.71□□□□□ -1.02
SS18-204ENST00000539244 TMEM97Q5BJF2 176 aa8.71□□□□□ -1.02
SS18-204ENST00000539244 AKR1C8PQ5T2L2 129 aa8.71□□□□□ -1.02
SS18-204ENST00000539244 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.71□□□□□ -1.02
SS18-204ENST00000539244 CHCHD5Q9BSY4 110 aa8.71□□□□□ -1.02
SS18-204ENST00000539244 MAP1LC3B2A6NCE7 125 aa8.7□□□□□ -1.02
SS18-204ENST00000539244 SNAI2O43623 268 aa8.7□□□□□ -1.02
SS18-204ENST00000539244 GIPP09681 153 aaPredicted RBP8.7□□□□□ -1.02
SS18-204ENST00000539244 CIRBPQ14011 172 aaKnown RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms