RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 SPXQ9BT56 116 aa8.82□□□□□ -1
CLSTN3-208ENST00000538933 DEFB131BA0A096LNP1 70 aa8.81□□□□□ -1
CLSTN3-208ENST00000538933 F2Z2F3 143 aa8.81□□□□□ -1
CLSTN3-208ENST00000538933 M0R381 172 aa8.81□□□□□ -1
CLSTN3-208ENST00000538933 CACNG7P62955 275 aa8.81□□□□□ -1
CLSTN3-208ENST00000538933 DNLZQ5SXM8 178 aa8.81□□□□□ -1
CLSTN3-208ENST00000538933 LYZL1Q6UWQ5 148 aa8.81□□□□□ -1
CLSTN3-208ENST00000538933 ZFP82Q8N141 532 aa8.81□□□□□ -1
CLSTN3-208ENST00000538933 NDUFAF3Q9BU61 184 aa8.81□□□□□ -1
CLSTN3-208ENST00000538933 NOP10Q9NPE3 64 aaKnown RBP8.81□□□□□ -1
CLSTN3-208ENST00000538933 TMEM242Q9NWH2 141 aa8.81□□□□□ -1
CLSTN3-208ENST00000538933 TRGV1A0A0A0MS02 117 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 MUC21A0A0G2JKD1 596 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 MUC21A0A140T8X8 626 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 SMIM27A0A1W2PRY6 76 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 M0R2P5 195 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 SPINK4O60575 86 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 OR5AL1P0C617 328 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 IGLC6P0CF74 106 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 RNASE3P12724 160 aaKnown RBP8.8□□□□□ -1
CLSTN3-208ENST00000538933 ATRAIDQ6UW56 229 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 C11orf72Q8NBR9 251 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 GTSF1Q8WW33 167 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 C9orf85Q96MD7 179 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 IMMP2LQ96T52 175 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 CELA1Q9UNI1 258 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 URGCP-MRPS24S4R325 110 aa8.8□□□□□ -1
CLSTN3-208ENST00000538933 FLG2Q5D862 2391 aaPredicted RBP8.8□□□□□ -1
CLSTN3-208ENST00000538933 SNAI2O43623 268 aa8.79□□□□□ -1
CLSTN3-208ENST00000538933 FAM3BP58499 235 aaPredicted RBP8.79□□□□□ -1
CLSTN3-208ENST00000538933 RIGQ13278 110 aa8.79□□□□□ -1
CLSTN3-208ENST00000538933 TWIST1Q15672 202 aa8.79□□□□□ -1
CLSTN3-208ENST00000538933 ZNF876PQ49A33 203 aa8.79□□□□□ -1
CLSTN3-208ENST00000538933 SMIM15Q7Z3B0 74 aa8.79□□□□□ -1
CLSTN3-208ENST00000538933 NUP35Q8NFH5 326 aa8.79□□□□□ -1
CLSTN3-208ENST00000538933 SMCO4Q9NRQ5 59 aa8.79□□□□□ -1
CLSTN3-208ENST00000538933 MRPL16Q9NX20 251 aaKnown RBP8.79□□□□□ -1
CLSTN3-208ENST00000538933 A0A1B0GUT8 65 aa8.78□□□□□ -1
CLSTN3-208ENST00000538933 TEX48A0A1B0GUV7 120 aa8.78□□□□□ -1
CLSTN3-208ENST00000538933 SPART-AS1P0CW21 52 aa8.78□□□□□ -1
CLSTN3-208ENST00000538933 CTRLP40313 264 aa8.78□□□□□ -1
CLSTN3-208ENST00000538933 DAZ2Q13117 558 aaKnown RBP8.78□□□□□ -1
CLSTN3-208ENST00000538933 MRPL54Q6P161 138 aaKnown RBP8.78□□□□□ -1
CLSTN3-208ENST00000538933 OR10AG1Q8NH19 301 aa8.78□□□□□ -1
CLSTN3-208ENST00000538933 BTF3L4Q96K17 158 aa8.78□□□□□ -1
CLSTN3-208ENST00000538933 TRGV2A0A075B6R0 118 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 GAGE12BA1L429 117 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 LYRM9A8MSI8 78 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 GAGE7O76087 117 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 S100A8P05109 93 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 TRGC1P0CF51 173 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 GAGE12FP0CL80 117 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 GAGE12GP0CL81 117 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 GAGE12IP0CL82 117 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 SMIM17P0DL12 118 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 FOXA3P55318 350 aaPredicted RBP8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 FAM222AQ5U5X8 452 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 TMEM88Q6PEY1 159 aa8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 SSBP4Q9BWG4 385 aaPredicted RBP8.77□□□□□ -1.01
CLSTN3-208ENST00000538933 TRAV9-1A0A075B6T8 112 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 PLAC8L1A1L4L8 177 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 INAFM2P0DMQ5 153 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 DEFB130BP0DP73 79 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 DEFB130AP0DP74 79 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 NTF3P20783 257 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 DAD1P61803 113 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 WDR73Q6P4I2 378 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 Q6ZTI0 123 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 AP1S3Q96PC3 154 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 HMCN2Q8NDA2 5059 aa8.76□□□□□ -1.01
CLSTN3-208ENST00000538933 A0A1B0GW15 77 aa8.75□□□□□ -1.01
CLSTN3-208ENST00000538933 A8MWV9 139 aa8.75□□□□□ -1.01
CLSTN3-208ENST00000538933 CAMPP49913 170 aa8.75□□□□□ -1.01
CLSTN3-208ENST00000538933 RAB4BP61018 213 aa8.75□□□□□ -1.01
CLSTN3-208ENST00000538933 HBBP68871 147 aa8.75□□□□□ -1.01
CLSTN3-208ENST00000538933 DMRTA1Q5VZB9 504 aa8.75□□□□□ -1.01
CLSTN3-208ENST00000538933 ATP5L2Q7Z4Y8 100 aa8.75□□□□□ -1.01
CLSTN3-208ENST00000538933 CBLN2Q8IUK8 224 aa8.75□□□□□ -1.01
CLSTN3-208ENST00000538933 DKK2Q9UBU2 259 aa8.75□□□□□ -1.01
CLSTN3-208ENST00000538933 EPM2AB3EWF7 344 aa8.74□□□□□ -1.01
CLSTN3-208ENST00000538933 SCO1O75880 301 aa8.74□□□□□ -1.01
CLSTN3-208ENST00000538933 FAM74A4Q5TZK3 123 aa8.74□□□□□ -1.01
CLSTN3-208ENST00000538933 UBE2DNLQ8IWF7 75 aa8.74□□□□□ -1.01
CLSTN3-208ENST00000538933 OR4C5Q8NGB2 326 aa8.74□□□□□ -1.01
CLSTN3-208ENST00000538933 RASL10AQ92737 203 aa8.74□□□□□ -1.01
CLSTN3-208ENST00000538933 PTH2Q96A98 100 aa8.74□□□□□ -1.01
CLSTN3-208ENST00000538933 MGPP08493 103 aa8.73□□□□□ -1.01
CLSTN3-208ENST00000538933 ELOBQ15370 118 aa8.73□□□□□ -1.01
CLSTN3-208ENST00000538933 PIK3CD-AS1Q5SR53 167 aa8.73□□□□□ -1.01
CLSTN3-208ENST00000538933 CNFNQ9BYD5 112 aa8.73□□□□□ -1.01
CLSTN3-208ENST00000538933 MSRB1Q9NZV6 116 aa8.73□□□□□ -1.01
CLSTN3-208ENST00000538933 A0A087WWL8 130 aa8.72□□□□□ -1.01
CLSTN3-208ENST00000538933 TGIF2-C20orf24A0A0A6YYL0 155 aa8.72□□□□□ -1.01
CLSTN3-208ENST00000538933 TRAV4A0A0B4J268 109 aa8.72□□□□□ -1.01
CLSTN3-208ENST00000538933 F5H697 171 aa8.72□□□□□ -1.01
CLSTN3-208ENST00000538933 RHODO00212 210 aa8.72□□□□□ -1.01
CLSTN3-208ENST00000538933 NXPH4O95158 308 aa8.72□□□□□ -1.01
CLSTN3-208ENST00000538933 IGHV3-53P01767 116 aa8.72□□□□□ -1.01
CLSTN3-208ENST00000538933 ZNF56Q15929 161 aa8.72□□□□□ -1.01
CLSTN3-208ENST00000538933 COX19Q49B96 90 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms