RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 LTAP01374 205 aa10.54□□□□□ -0.72
CPSF1-208ENST00000532560 RASL11AQ6T310 242 aa10.54□□□□□ -0.72
CPSF1-208ENST00000532560 FAM231DQ6ZW35 169 aa10.54□□□□□ -0.72
CPSF1-208ENST00000532560 TSTD3H0UI37 97 aa10.53□□□□□ -0.72
CPSF1-208ENST00000532560 K7EN84 100 aa10.53□□□□□ -0.72
CPSF1-208ENST00000532560 GNRH2O43555 120 aa10.53□□□□□ -0.72
CPSF1-208ENST00000532560 PKIAP61925 76 aa10.53□□□□□ -0.72
CPSF1-208ENST00000532560 OR5I1Q13606 314 aa10.53□□□□□ -0.72
CPSF1-208ENST00000532560 POM121L12Q8N7R1 296 aa10.53□□□□□ -0.72
CPSF1-208ENST00000532560 RASL10AQ92737 203 aa10.53□□□□□ -0.72
CPSF1-208ENST00000532560 V9GYV3 84 aa10.53□□□□□ -0.72
CPSF1-208ENST00000532560 VPS13DQ5THJ4 4388 aa10.53□□□□□ -0.72
CPSF1-208ENST00000532560 TRAV26-1A0A087WT03 109 aa10.52□□□□□ -0.73
CPSF1-208ENST00000532560 PGPEP1LA6NFU8 196 aa10.52□□□□□ -0.73
CPSF1-208ENST00000532560 LINC00587B1AMM8 73 aa10.52□□□□□ -0.73
CPSF1-208ENST00000532560 H3BNG1 76 aa10.52□□□□□ -0.73
CPSF1-208ENST00000532560 GATCO43716 136 aaKnown RBP10.52□□□□□ -0.73
CPSF1-208ENST00000532560 ESDP10768 282 aa10.52□□□□□ -0.73
CPSF1-208ENST00000532560 ZC2HC1AQ96GY0 325 aa10.52□□□□□ -0.73
CPSF1-208ENST00000532560 MUC4Q99102 2169 aa10.52□□□□□ -0.73
CPSF1-208ENST00000532560 BIRC6Q9NR09 4857 aa10.51□□□□□ -0.73
CPSF1-208ENST00000532560 FABP5P3A8MUU1 101 aa10.51□□□□□ -0.73
CPSF1-208ENST00000532560 M0R2P5 195 aa10.51□□□□□ -0.73
CPSF1-208ENST00000532560 PDZD11Q5EBL8 140 aa10.51□□□□□ -0.73
CPSF1-208ENST00000532560 DNAH6Q9C0G6 4158 aa10.51□□□□□ -0.73
CPSF1-208ENST00000532560 KMT2AQ03164 3969 aa10.5□□□□□ -0.73
CPSF1-208ENST00000532560 NUDT3O95989 172 aa10.5□□□□□ -0.73
CPSF1-208ENST00000532560 Q0VG73 95 aa10.5□□□□□ -0.73
CPSF1-208ENST00000532560 IQCJQ1A5X6 159 aa10.5□□□□□ -0.73
CPSF1-208ENST00000532560 FAM162BQ5T6X4 162 aa10.5□□□□□ -0.73
CPSF1-208ENST00000532560 UBE2DNLQ8IWF7 75 aa10.5□□□□□ -0.73
CPSF1-208ENST00000532560 C9orf85Q96MD7 179 aa10.5□□□□□ -0.73
CPSF1-208ENST00000532560 IGKV3D-20A0A0C4DH25 116 aa10.49□□□□□ -0.73
CPSF1-208ENST00000532560 SMIM27A0A1W2PRY6 76 aa10.49□□□□□ -0.73
CPSF1-208ENST00000532560 IGLV2-8P01709 118 aa10.49□□□□□ -0.73
CPSF1-208ENST00000532560 HLA-DQA1P01909 254 aa10.49□□□□□ -0.73
CPSF1-208ENST00000532560 CRIP1P50238 77 aa10.49□□□□□ -0.73
CPSF1-208ENST00000532560 MRPL18Q9H0U6 180 aaKnown RBP10.49□□□□□ -0.73
CPSF1-208ENST00000532560 TRAV4A0A0B4J268 109 aa10.48□□□□□ -0.73
CPSF1-208ENST00000532560 A0A0J9YY99 117 aa10.48□□□□□ -0.73
CPSF1-208ENST00000532560 SH2D1AO60880 128 aa10.48□□□□□ -0.73
CPSF1-208ENST00000532560 IGHV3-53P01767 116 aa10.48□□□□□ -0.73
CPSF1-208ENST00000532560 RNASE3P12724 160 aaKnown RBP10.48□□□□□ -0.73
CPSF1-208ENST00000532560 SLAQ13239 276 aa10.48□□□□□ -0.73
CPSF1-208ENST00000532560 OR10J3Q5JRS4 329 aa10.48□□□□□ -0.73
CPSF1-208ENST00000532560 VSIG2Q96IQ7 327 aa10.48□□□□□ -0.73
CPSF1-208ENST00000532560 GZMBP10144 247 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 ASIPP42127 132 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 FHL2Q14192 279 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 LINC01559Q495D7 138 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 CT83Q5H943 113 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 ATP5L2Q7Z4Y8 100 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 BAGE2Q86Y30 109 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 NHLRC2Q8NBF2 726 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 PTH2Q96A98 100 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 MLST8Q9BVC4 326 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 PRO0255Q9UI72 69 aa10.47□□□□□ -0.73
CPSF1-208ENST00000532560 ORM1P02763 201 aa10.46□□□□□ -0.73
CPSF1-208ENST00000532560 MGST1P10620 155 aaKnown RBP10.46□□□□□ -0.73
CPSF1-208ENST00000532560 ZNF479Q96JC4 524 aa10.46□□□□□ -0.73
CPSF1-208ENST00000532560 NACAE9PAV3 2078 aa10.45□□□□□ -0.74
CPSF1-208ENST00000532560 TRGV4A0A0C4DH28 118 aa10.45□□□□□ -0.74
CPSF1-208ENST00000532560 PAX4O43316 350 aa10.45□□□□□ -0.74
CPSF1-208ENST00000532560 S100A4P26447 101 aaKnown RBP10.45□□□□□ -0.74
CPSF1-208ENST00000532560 CRYBA4P53673 196 aa10.45□□□□□ -0.74
CPSF1-208ENST00000532560 CCL18P55774 89 aa10.45□□□□□ -0.74
CPSF1-208ENST00000532560 ZNF876PQ49A33 203 aa10.45□□□□□ -0.74
CPSF1-208ENST00000532560 LBHQ53QV2 105 aaPredicted RBP10.45□□□□□ -0.74
CPSF1-208ENST00000532560 PIK3CD-AS1Q5SR53 167 aa10.45□□□□□ -0.74
CPSF1-208ENST00000532560 OR4C5Q8NGB2 326 aa10.45□□□□□ -0.74
CPSF1-208ENST00000532560 NAT8BQ9UHF3 227 aa10.45□□□□□ -0.74
CPSF1-208ENST00000532560 HHLA3Q9XRX5 114 aa10.45□□□□□ -0.74
CPSF1-208ENST00000532560 A0A096LPF7 62 aa10.44□□□□□ -0.74
CPSF1-208ENST00000532560 FAM231BA6NCW3 169 aa10.44□□□□□ -0.74
CPSF1-208ENST00000532560 TMEM136Q6ZRR5 245 aa10.44□□□□□ -0.74
CPSF1-208ENST00000532560 RNASE7Q9H1E1 156 aaKnown RBP10.44□□□□□ -0.74
CPSF1-208ENST00000532560 LINC00588Q9Y4M8 146 aa10.44□□□□□ -0.74
CPSF1-208ENST00000532560 H3BVH4 76 aa10.43□□□□□ -0.74
CPSF1-208ENST00000532560 DDTP30046 118 aa10.43□□□□□ -0.74
CPSF1-208ENST00000532560 RAB4BP61018 213 aa10.43□□□□□ -0.74
CPSF1-208ENST00000532560 BAGE3Q86Y29 109 aa10.43□□□□□ -0.74
CPSF1-208ENST00000532560 TSKUQ8WUA8 353 aa10.43□□□□□ -0.74
CPSF1-208ENST00000532560 GFRA4Q9GZZ7 299 aa10.43□□□□□ -0.74
CPSF1-208ENST00000532560 ICOSQ9Y6W8 199 aa10.43□□□□□ -0.74
CPSF1-208ENST00000532560 RS1O15537 224 aa10.42□□□□□ -0.74
CPSF1-208ENST00000532560 CIDEAO60543 219 aa10.42□□□□□ -0.74
CPSF1-208ENST00000532560 CFAP126Q5VTH2 177 aa10.42□□□□□ -0.74
CPSF1-208ENST00000532560 ZNF575Q86XF7 245 aa10.42□□□□□ -0.74
CPSF1-208ENST00000532560 A8MWL6 223 aa10.41□□□□□ -0.74
CPSF1-208ENST00000532560 GATA1P15976 413 aaPredicted RBP10.41□□□□□ -0.74
CPSF1-208ENST00000532560 MRPL23Q16540 153 aaKnown RBP10.41□□□□□ -0.74
CPSF1-208ENST00000532560 DMRTA1Q5VZB9 504 aa10.41□□□□□ -0.74
CPSF1-208ENST00000532560 PRR27Q6MZM9 219 aa10.41□□□□□ -0.74
CPSF1-208ENST00000532560 NUDT10Q8NFP7 164 aa10.41□□□□□ -0.74
CPSF1-208ENST00000532560 ZNRF2Q8NHG8 242 aa10.41□□□□□ -0.74
CPSF1-208ENST00000532560 NUDT11Q96G61 164 aa10.41□□□□□ -0.74
CPSF1-208ENST00000532560 SCRT2Q9NQ03 307 aa10.41□□□□□ -0.74
CPSF1-208ENST00000532560 TMSB15BA0A087X1C1 80 aa10.4□□□□□ -0.74
CPSF1-208ENST00000532560 GRIFINA4D1Z8 144 aa10.4□□□□□ -0.74
CPSF1-208ENST00000532560 A8MWV9 139 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms