RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 MRPL35Q9NZE8 188 aaKnown RBP1.5□□□□□ -2.17
CD44-216ENST00000525293 DPM3Q9P2X0 92 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 DEC1Q9P2X7 70 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 TOP2BQ02880 1626 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 AHDC1Q5TGY3 1603 aaPredicted RBP1.5□□□□□ -2.17
CD44-216ENST00000525293 NWD1Q149M9 1564 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 MROH2BQ7Z745 1585 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 NFAT5O94916 1531 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 HECTD1Q9ULT8 2610 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 PXDNQ92626 1479 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 SCN4AP35499 1836 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 PATJQ8NI35 1801 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 FASNP49327 2511 aaKnown RBP1.49□□□□□ -2.17
CD44-216ENST00000525293 JMJD1CQ15652 2540 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 SIPA1L3O60292 1781 aaPredicted RBP1.49□□□□□ -2.17
CD44-216ENST00000525293 DOCK8Q8NF50 2099 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 CDC42BPBQ9Y5S2 1711 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 FANCMQ8IYD8 2048 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 PTPN23Q9H3S7 1636 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 MYLKQ15746 1914 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 IGHV5-10-1A0A0J9YXX1 117 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 A0A0J9YXY3 114 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 MYMXA0A1B0GTQ4 84 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 A6NED7 52 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 HCG22E2RYF7 251 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 H3BMM0 161 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 C19orf84I3L1E1 186 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 K7EMI3 77 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 NPYP01303 97 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 IGLV3-25P01717 112 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 PRH1P02810 166 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 IL4P05112 153 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 ACYP1P07311 99 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 ZNF22P17026 224 aaPredicted RBP1.49□□□□□ -2.17
CD44-216ENST00000525293 UBE2D3P61077 147 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 UBE2D2P62837 147 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 RNASE13Q5GAN3 156 aaKnown RBP1.49□□□□□ -2.17
CD44-216ENST00000525293 C1orf134Q5TEV5 83 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 SDIM1Q6ZPB5 146 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 C20orf197Q8N268 126 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 Q8N814 137 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 NPBQ8NG41 125 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 C7orf33Q8WU49 177 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 UBE2WQ96B02 151 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 TMEM141Q96I45 108 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 C11orf1Q9H5F2 150 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 PSENENQ9NZ42 101 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 GNG13Q9P2W3 67 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 TRPM2O94759 1503 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 CHD6Q8TD26 2715 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 ARFGEF2Q9Y6D5 1785 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 HELZ2Q9BYK8 2649 aaKnown RBP1.49□□□□□ -2.17
CD44-216ENST00000525293 SUPT6HQ7KZ85 1726 aaKnown RBP1.49□□□□□ -2.17
CD44-216ENST00000525293 CRYBG1Q9Y4K1 1723 aa1.49□□□□□ -2.17
CD44-216ENST00000525293 PIEZO1Q92508 2521 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 PHRF1Q9P1Y6 1649 aaKnown RBP1.48□□□□□ -2.17
CD44-216ENST00000525293 SNRNP200O75643 2136 aaKnown RBP1.48□□□□□ -2.17
CD44-216ENST00000525293 CEP170BQ9Y4F5 1589 aaPredicted RBP1.48□□□□□ -2.17
CD44-216ENST00000525293 ABCA12Q86UK0 2595 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 IGHV3-43A0A0B4J1X8 118 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 TRAV22A0A0B4J277 110 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 A0A0B4J2C4 111 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 TEX49A0A1B0GTD5 131 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 A0A1B0GWA3 101 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 TMEM223A0PJW6 202 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 TMEM30CPA0ZSE6 113 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 A8MWP4 228 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 F8WEM9 126 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 LECT2O14960 151 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 LY6HO94772 140 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 IGKV1D-33P01593 117 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 IGKV1-33P01594 117 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 SAA1P0DJI8 122 aaPredicted RBP1.48□□□□□ -2.17
CD44-216ENST00000525293 NPPCP23582 126 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 RPL27AP46776 148 aaKnown RBP1.48□□□□□ -2.17
CD44-216ENST00000525293 SSBP1Q04837 148 aaKnown RBP1.48□□□□□ -2.17
CD44-216ENST00000525293 MOBPQ13875 183 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 PRR4Q16378 134 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 LUZP6Q538Z0 58 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 SPANXN1Q5VSR9 72 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 Q5VV11 94 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 LYZL1Q6UWQ5 148 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 Q6ZR03 302 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 LYZL2Q7Z4W2 148 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 LYPD6Q86Y78 171 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 RPRMLQ8N4K4 120 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 CNEP1R1Q8N9A8 125 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 Q8N9L7 120 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 C1orf64Q8NEQ6 169 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 RMI2Q96E14 147 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 SCGB3A1Q96QR1 104 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 NMES1Q9C002 83 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 CMC2Q9NRP2 79 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 ARID1AO14497 2285 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 RGPD1P0DJD0 1748 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 ITPR3Q14573 2671 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 MIA3Q5JRA6 1907 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 KIAA1109Q2LD37 5005 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 USP54Q70EL1 1684 aa1.48□□□□□ -2.17
CD44-216ENST00000525293 DYSFO75923 2080 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms