RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 FER1L5A0AVI2 2057 aa3.24□□□□□ -1.89
VCAN-209ENST00000513016 C18orf32Q8TCD1 76 aa3.24□□□□□ -1.89
VCAN-209ENST00000513016 DIRC1Q969H9 104 aa3.24□□□□□ -1.89
VCAN-209ENST00000513016 OPRPNQ99935 248 aaPredicted RBP3.24□□□□□ -1.89
VCAN-209ENST00000513016 ZNF664Q8N3J9 261 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 PRO1854Q9UHT4 67 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 ZNF706Q9Y5V0 76 aaPredicted RBP3.23□□□□□ -1.89
VCAN-209ENST00000513016 SPTBN2O15020 2390 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 FREM3P0C091 2139 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 ZFAND6Q6FIF0 208 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 HIST1H2BLQ99880 126 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 MSMPQ1L6U9 139 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 MRPL35Q9NZE8 188 aaKnown RBP3.23□□□□□ -1.89
VCAN-209ENST00000513016 ALPK2Q86TB3 2170 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 HIST3H2BBQ8N257 126 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 LINC00482Q8N8I6 264 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 PCNX2A6NKB5 2137 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 RSPO3Q9BXY4 272 aaPredicted RBP3.23□□□□□ -1.89
VCAN-209ENST00000513016 RNASE13Q5GAN3 156 aaKnown RBP3.23□□□□□ -1.89
VCAN-209ENST00000513016 SND1-IT1Q9HBX3 110 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 KIF26BQ2KJY2 2108 aa3.23□□□□□ -1.89
VCAN-209ENST00000513016 UNQ9165/PRO28630Q6UXU0 137 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 LINC00474Q9P2X8 69 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 FANCMQ8IYD8 2048 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 CACNA1HO95180 2353 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 MUC6Q6W4X9 2439 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 FAM110AQ9BQ89 295 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 C16orf95Q9H693 158 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 U3KQK5 164 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 LRRK1Q38SD2 2015 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 LTBP2Q14767 1821 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 ODF1Q14990 250 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 ZNF726P1Q15940 193 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 OCIAD2Q56VL3 154 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 CYYR1Q96J86 154 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 IGKV2-24A0A0C4DH68 120 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 WISP2O76076 250 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 TRACP01848 142 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 KIR3DS1Q14943 382 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 A0A087WZ39 114 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 TRBV6-4A0A1B0GX49 114 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 TRBV12-3P01733 135 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 REG3AQ06141 175 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 Q8N976 141 aa3.22□□□□□ -1.89
VCAN-209ENST00000513016 POLR3KQ9Y2Y1 108 aaPredicted RBP3.22□□□□□ -1.89
VCAN-209ENST00000513016 PATE2Q6UY27 113 aa3.21□□□□□ -1.89
VCAN-209ENST00000513016 CARD19Q96LW7 228 aa3.21□□□□□ -1.89
VCAN-209ENST00000513016 ZNF747Q9BV97 191 aa3.21□□□□□ -1.89
VCAN-209ENST00000513016 ZNF124Q15973 351 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 MIAQ16674 131 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 IGHV4-28A0A0C4DH34 117 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 COLCA2A8K830 154 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 CCDC140Q96MF4 163 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 DOCK8Q8NF50 2099 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 CACNA1DQ01668 2161 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 ATRAIDQ6UW56 229 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 LY6LH3BQJ8 138 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 PSMB8P28062 276 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 PRAC2D3DTV9 90 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 CHKB-CPT1BH3BT56 60 aa3.21□□□□□ -1.9
VCAN-209ENST00000513016 COX7BP24311 80 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 Q6ZTI0 123 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 TP53BP1Q12888 1972 aaPredicted RBP3.2□□□□□ -1.9
VCAN-209ENST00000513016 IGLC2P0DOY2 106 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 ANAPC1Q9H1A4 1944 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 LRCOL1A6NCL2 159 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 PDE6GP18545 87 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 SYCNQ0VAF6 134 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 HIGD2BQ4VC39 106 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 KPRPQ5T749 579 aaPredicted RBP3.2□□□□□ -1.9
VCAN-209ENST00000513016 LELP1Q5T871 98 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 RPL39LQ96EH5 51 aaKnown RBP3.2□□□□□ -1.9
VCAN-209ENST00000513016 A0A0J9YXV3 536 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 IGHV4-4A0A075B6R2 117 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 NREPQ16612 68 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 MORN5Q5VZ52 161 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 ANKRD29Q8N6D5 301 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 TMEM131Q92545 1883 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 HIVEP2P31629 2446 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 IGLV2-18A0A075B6J9 118 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 TRAV12-1A0A0B4J245 112 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 MP68P56378 58 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 FAM19A1Q7Z5A9 133 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 ZFAND2AQ8N6M9 145 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 PTPRDP23468 1912 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 PROP1O75360 226 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 CFC1BP0CG36 223 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 CFC1P0CG37 223 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 IGHV4-30-4P0DP06 118 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 COX8AP10176 69 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 CTRLP40313 264 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 LINC00269Q8N2A0 174 aa3.2□□□□□ -1.9
VCAN-209ENST00000513016 A4D1N5 150 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 JMJD7-PLA2G4BH0Y9G9 81 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 M0R2N4 97 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 RS1O15537 224 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 OXLD1Q5BKU9 147 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 CHCHD10Q8WYQ3 142 aaPredicted RBP3.19□□□□□ -1.9
VCAN-209ENST00000513016 MDFICQ9P1T7 246 aa3.19□□□□□ -1.9
VCAN-209ENST00000513016 ARFGEF3Q5TH69 2177 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms