RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 HLA-DQA1P01909 254 aa9.44□□□□□ -0.9
TRAF4-212ENST00000498540 PRSS1P07477 247 aa9.44□□□□□ -0.9
TRAF4-212ENST00000498540 ARMS2P0C7Q2 107 aa9.44□□□□□ -0.9
TRAF4-212ENST00000498540 UBE2D3P61077 147 aa9.44□□□□□ -0.9
TRAF4-212ENST00000498540 UBE2D2P62837 147 aa9.44□□□□□ -0.9
TRAF4-212ENST00000498540 C15orf54Q8N8G6 183 aa9.44□□□□□ -0.9
TRAF4-212ENST00000498540 OR11H4Q8NGC9 324 aa9.44□□□□□ -0.9
TRAF4-212ENST00000498540 GRIFINA4D1Z8 144 aa9.43□□□□□ -0.9
TRAF4-212ENST00000498540 TMEM262E9PQX1 116 aa9.43□□□□□ -0.9
TRAF4-212ENST00000498540 INMT-MINDY4F8WBC2 141 aa9.43□□□□□ -0.9
TRAF4-212ENST00000498540 M0R036 132 aa9.43□□□□□ -0.9
TRAF4-212ENST00000498540 CRPP02741 224 aa9.43□□□□□ -0.9
TRAF4-212ENST00000498540 MPV17L2Q567V2 206 aa9.43□□□□□ -0.9
TRAF4-212ENST00000498540 HSD17B11Q8NBQ5 300 aa9.43□□□□□ -0.9
TRAF4-212ENST00000498540 SFRP2Q96HF1 295 aa9.43□□□□□ -0.9
TRAF4-212ENST00000498540 KRBOX1C9JBD0 128 aa9.42□□□□□ -0.9
TRAF4-212ENST00000498540 CRIP1P50238 77 aa9.42□□□□□ -0.9
TRAF4-212ENST00000498540 RPL36AP83881 106 aaKnown RBP9.42□□□□□ -0.9
TRAF4-212ENST00000498540 DNLZQ5SXM8 178 aa9.42□□□□□ -0.9
TRAF4-212ENST00000498540 Q86TA4 180 aa9.42□□□□□ -0.9
TRAF4-212ENST00000498540 C9orf163Q8N9P6 203 aa9.42□□□□□ -0.9
TRAF4-212ENST00000498540 RPL36ALQ969Q0 106 aaKnown RBP9.42□□□□□ -0.9
TRAF4-212ENST00000498540 TMEM167BQ9NRX6 74 aa9.42□□□□□ -0.9
TRAF4-212ENST00000498540 TRBV7-3A0A075B6L6 115 aa9.41□□□□□ -0.9
TRAF4-212ENST00000498540 TRBV10-1A0A0K0K1A3 114 aa9.41□□□□□ -0.9
TRAF4-212ENST00000498540 M0R381 172 aa9.41□□□□□ -0.9
TRAF4-212ENST00000498540 SSNA1O43805 119 aa9.41□□□□□ -0.9
TRAF4-212ENST00000498540 CXorf1O96002 111 aa9.41□□□□□ -0.9
TRAF4-212ENST00000498540 ANGP03950 147 aaKnown RBP9.41□□□□□ -0.9
TRAF4-212ENST00000498540 Q6ZRU5 148 aa9.41□□□□□ -0.9
TRAF4-212ENST00000498540 ZC2HC1AQ96GY0 325 aa9.41□□□□□ -0.9
TRAF4-212ENST00000498540 PHLDA3Q9Y5J5 127 aa9.41□□□□□ -0.9
TRAF4-212ENST00000498540 TRBV6-8A0A0A6YYG3 113 aa9.4□□□□□ -0.9
TRAF4-212ENST00000498540 SH2D1AO60880 128 aa9.4□□□□□ -0.9
TRAF4-212ENST00000498540 DGAT2L7PQ6IED9 249 aa9.4□□□□□ -0.9
TRAF4-212ENST00000498540 PSMG3Q9BT73 122 aaPredicted RBP9.4□□□□□ -0.9
TRAF4-212ENST00000498540 LRP2P98164 4655 aa9.4□□□□□ -0.9
TRAF4-212ENST00000498540 A0A1W2PRE2 83 aa9.39□□□□□ -0.91
TRAF4-212ENST00000498540 ATP6V0CP27449 155 aa9.39□□□□□ -0.91
TRAF4-212ENST00000498540 IFITM3Q01628 133 aa9.39□□□□□ -0.91
TRAF4-212ENST00000498540 SDIM1Q6ZPB5 146 aa9.39□□□□□ -0.91
TRAF4-212ENST00000498540 OR10G8Q8NGN5 311 aa9.39□□□□□ -0.91
TRAF4-212ENST00000498540 MARVELD1Q9BSK0 173 aa9.39□□□□□ -0.91
TRAF4-212ENST00000498540 RNF213Q63HN8 5207 aa9.39□□□□□ -0.91
TRAF4-212ENST00000498540 TMSB15BA0A087X1C1 80 aa9.38□□□□□ -0.91
TRAF4-212ENST00000498540 PEX7O00628 323 aa9.38□□□□□ -0.91
TRAF4-212ENST00000498540 UPK1BO75841 260 aa9.38□□□□□ -0.91
TRAF4-212ENST00000498540 PTTG1O95997 202 aa9.38□□□□□ -0.91
TRAF4-212ENST00000498540 IFNA7P01567 189 aa9.38□□□□□ -0.91
TRAF4-212ENST00000498540 TPT1P13693 172 aaKnown RBP9.38□□□□□ -0.91
TRAF4-212ENST00000498540 MIAQ16674 131 aa9.38□□□□□ -0.91
TRAF4-212ENST00000498540 KRTAP26-1Q6PEX3 210 aa9.38□□□□□ -0.91
TRAF4-212ENST00000498540 CLPSL2Q6UWE3 100 aa9.38□□□□□ -0.91
TRAF4-212ENST00000498540 NEXN-AS1Q8NBZ9 246 aa9.38□□□□□ -0.91
TRAF4-212ENST00000498540 TNXBP22105 4242 aa9.37□□□□□ -0.91
TRAF4-212ENST00000498540 A0A0D9SG52 128 aa9.37□□□□□ -0.91
TRAF4-212ENST00000498540 MBP02144 154 aa9.37□□□□□ -0.91
TRAF4-212ENST00000498540 UBE2G2P60604 165 aa9.37□□□□□ -0.91
TRAF4-212ENST00000498540 RPL19P84098 196 aaKnown RBP9.37□□□□□ -0.91
TRAF4-212ENST00000498540 ZFP82Q8N141 532 aa9.37□□□□□ -0.91
TRAF4-212ENST00000498540 S100ZQ8WXG8 99 aa9.37□□□□□ -0.91
TRAF4-212ENST00000498540 CHCHD5Q9BSY4 110 aa9.37□□□□□ -0.91
TRAF4-212ENST00000498540 ACTR3CQ9C0K3 210 aaPredicted RBP9.37□□□□□ -0.91
TRAF4-212ENST00000498540 SERF2P84101 59 aa9.36□□□□□ -0.91
TRAF4-212ENST00000498540 CIRBPQ14011 172 aaKnown RBP9.36□□□□□ -0.91
TRAF4-212ENST00000498540 LINC01559Q495D7 138 aa9.36□□□□□ -0.91
TRAF4-212ENST00000498540 FAM162BQ5T6X4 162 aa9.36□□□□□ -0.91
TRAF4-212ENST00000498540 COX8CQ7Z4L0 72 aa9.36□□□□□ -0.91
TRAF4-212ENST00000498540 PRR34Q9NV39 138 aa9.36□□□□□ -0.91
TRAF4-212ENST00000498540 ZNF56Q15929 161 aa9.35□□□□□ -0.91
TRAF4-212ENST00000498540 ZNF726P1Q15940 193 aa9.35□□□□□ -0.91
TRAF4-212ENST00000498540 PRR27Q6MZM9 219 aa9.35□□□□□ -0.91
TRAF4-212ENST00000498540 LINC00299Q6ZSB3 139 aa9.35□□□□□ -0.91
TRAF4-212ENST00000498540 NTM-AS1Q6ZSK4 140 aa9.35□□□□□ -0.91
TRAF4-212ENST00000498540 NDUFA13Q9P0J0 144 aa9.35□□□□□ -0.91
TRAF4-212ENST00000498540 TNFSF18Q9UNG2 199 aa9.35□□□□□ -0.91
TRAF4-212ENST00000498540 RAB4BP61018 213 aa9.34□□□□□ -0.91
TRAF4-212ENST00000498540 ZNF674Q2M3X9 581 aa9.34□□□□□ -0.91
TRAF4-212ENST00000498540 LINC00269Q8N2A0 174 aa9.34□□□□□ -0.91
TRAF4-212ENST00000498540 ZFP30Q9Y2G7 519 aa9.34□□□□□ -0.91
TRAF4-212ENST00000498540 FAM74A7A6NL05 159 aa9.33□□□□□ -0.92
TRAF4-212ENST00000498540 CHTF8P0CG12 524 aa9.33□□□□□ -0.92
TRAF4-212ENST00000498540 PKIAP61925 76 aa9.33□□□□□ -0.92
TRAF4-212ENST00000498540 CNBPP62633 177 aaKnown RBP9.33□□□□□ -0.92
TRAF4-212ENST00000498540 RBX1P62877 108 aa9.33□□□□□ -0.92
TRAF4-212ENST00000498540 ODF1Q14990 250 aa9.33□□□□□ -0.92
TRAF4-212ENST00000498540 HIST1H2BAQ96A08 127 aa9.33□□□□□ -0.92
TRAF4-212ENST00000498540 A0A087WYN8 130 aa9.32□□□□□ -0.92
TRAF4-212ENST00000498540 GAGE6Q13070 117 aa9.32□□□□□ -0.92
TRAF4-212ENST00000498540 CLRN3Q8NCR9 226 aa9.32□□□□□ -0.92
TRAF4-212ENST00000498540 OR10AG1Q8NH19 301 aa9.32□□□□□ -0.92
TRAF4-212ENST00000498540 FMC1Q96HJ9 113 aa9.32□□□□□ -0.92
TRAF4-212ENST00000498540 AQP10Q96PS8 301 aa9.32□□□□□ -0.92
TRAF4-212ENST00000498540 IGLV10-54A0A075B6I4 117 aa9.31□□□□□ -0.92
TRAF4-212ENST00000498540 CTXND1A0A1B0GTU2 59 aa9.31□□□□□ -0.92
TRAF4-212ENST00000498540 hDV102S1A0JD36 115 aa9.31□□□□□ -0.92
TRAF4-212ENST00000498540 UBE2G1P62253 170 aa9.31□□□□□ -0.92
TRAF4-212ENST00000498540 SPACA4Q8TDM5 124 aa9.31□□□□□ -0.92
TRAF4-212ENST00000498540 IGHV3-64A0A075B6Q5 118 aa9.3□□□□□ -0.92
TRAF4-212ENST00000498540 LTAP01374 205 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms