RNA–Protein interactions for RNA: ENST00000498438.1

HOXD11-202, Transcript of homeobox D11, humanhuman

TSL 1 (best)

Gene HOXD11, Length 1,259 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11-202ENST00000498438 NFE4Q86UQ8 179 aa12.45□□□□□ -0.42
HOXD11-202ENST00000498438 ZFP82Q8N141 532 aa12.45□□□□□ -0.42
HOXD11-202ENST00000498438 C14orf178Q8N769 122 aaPredicted RBP12.45□□□□□ -0.42
HOXD11-202ENST00000498438 SFRP2Q96HF1 295 aa12.45□□□□□ -0.42
HOXD11-202ENST00000498438 GTSF1LQ9H1H1 148 aa12.45□□□□□ -0.42
HOXD11-202ENST00000498438 A0A087WWL8 130 aa12.44□□□□□ -0.42
HOXD11-202ENST00000498438 KRTAP10-2P60368 255 aa12.44□□□□□ -0.42
HOXD11-202ENST00000498438 LINC01556Q5JQF7 62 aa12.44□□□□□ -0.42
HOXD11-202ENST00000498438 LELP1Q5T871 98 aa12.44□□□□□ -0.42
HOXD11-202ENST00000498438 C10orf126Q8N4M7 172 aa12.44□□□□□ -0.42
HOXD11-202ENST00000498438 Q9UF83 564 aa12.44□□□□□ -0.42
HOXD11-202ENST00000498438 DNAH5Q8TE73 4624 aa12.43□□□□□ -0.42
HOXD11-202ENST00000498438 CXCL1P09341 107 aa12.43□□□□□ -0.42
HOXD11-202ENST00000498438 C9orf62Q8N4C0 152 aa12.43□□□□□ -0.42
HOXD11-202ENST00000498438 IFNA1P01562 189 aa12.42□□□□□ -0.42
HOXD11-202ENST00000498438 ERVFC1-1P60608 527 aa12.42□□□□□ -0.42
HOXD11-202ENST00000498438 MEF2BQ02080 365 aaPredicted RBP12.42□□□□□ -0.42
HOXD11-202ENST00000498438 CENPWQ5EE01 88 aa12.42□□□□□ -0.42
HOXD11-202ENST00000498438 BCL2P10415 239 aa12.41□□□□□ -0.42
HOXD11-202ENST00000498438 OR10AG1Q8NH19 301 aa12.41□□□□□ -0.42
HOXD11-202ENST00000498438 HSPG2P98160 4391 aa12.41□□□□□ -0.42
HOXD11-202ENST00000498438 SNAI2O43623 268 aa12.4□□□□□ -0.42
HOXD11-202ENST00000498438 PDE6DO43924 150 aa12.4□□□□□ -0.42
HOXD11-202ENST00000498438 BOLA1Q9Y3E2 137 aa12.4□□□□□ -0.42
HOXD11-202ENST00000498438 IGLV2-8P01709 118 aa12.39□□□□□ -0.43
HOXD11-202ENST00000498438 IGHV3-30P01768 117 aa12.39□□□□□ -0.43
HOXD11-202ENST00000498438 IGHV3-33P01772 117 aa12.39□□□□□ -0.43
HOXD11-202ENST00000498438 IGHV3-30-3P0DP02 117 aa12.39□□□□□ -0.43
HOXD11-202ENST00000498438 IGHV3-30-5P0DP03 117 aa12.39□□□□□ -0.43
HOXD11-202ENST00000498438 MUC21A0A0G2JKD1 596 aa12.38□□□□□ -0.43
HOXD11-202ENST00000498438 MUC21A0A140T8X8 626 aa12.38□□□□□ -0.43
HOXD11-202ENST00000498438 RAB19A4D1S5 217 aa12.38□□□□□ -0.43
HOXD11-202ENST00000498438 EREGO14944 169 aa12.38□□□□□ -0.43
HOXD11-202ENST00000498438 OR5AL1P0C617 328 aa12.38□□□□□ -0.43
HOXD11-202ENST00000498438 GNG4P50150 75 aa12.38□□□□□ -0.43
HOXD11-202ENST00000498438 SSBP4Q9BWG4 385 aaPredicted RBP12.38□□□□□ -0.43
HOXD11-202ENST00000498438 A0A087WTM6 91 aa12.37□□□□□ -0.43
HOXD11-202ENST00000498438 IBA57-AS1B1ANH7 110 aa12.37□□□□□ -0.43
HOXD11-202ENST00000498438 CDK2AP2O75956 126 aa12.37□□□□□ -0.43
HOXD11-202ENST00000498438 Q8N3U1 123 aa12.37□□□□□ -0.43
HOXD11-202ENST00000498438 MED9Q9NWA0 146 aa12.37□□□□□ -0.43
HOXD11-202ENST00000498438 VAX2Q9UIW0 290 aa12.37□□□□□ -0.43
HOXD11-202ENST00000498438 TRBV20OR9-2A0A075B6H5 130 aa12.36□□□□□ -0.43
HOXD11-202ENST00000498438 SPANXN1Q5VSR9 72 aa12.36□□□□□ -0.43
HOXD11-202ENST00000498438 ALKAL2Q6UX46 152 aa12.36□□□□□ -0.43
HOXD11-202ENST00000498438 SMIM12Q96EX1 92 aa12.36□□□□□ -0.43
HOXD11-202ENST00000498438 Q9HAA7 133 aa12.36□□□□□ -0.43
HOXD11-202ENST00000498438 APOBP04114 4563 aaKnown RBP12.36□□□□□ -0.43
HOXD11-202ENST00000498438 PCLOQ9Y6V0 5065 aa12.36□□□□□ -0.43
HOXD11-202ENST00000498438 A0A087WWC5 75 aa12.35□□□□□ -0.43
HOXD11-202ENST00000498438 TRBV10-1A0A0K0K1A3 114 aa12.35□□□□□ -0.43
HOXD11-202ENST00000498438 C19orf71A6NCJ1 209 aa12.35□□□□□ -0.43
HOXD11-202ENST00000498438 FUSP35637 526 aaKnown RBP eCLIP12.35□□□□□ -0.43
HOXD11-202ENST00000498438 SSTP61278 116 aa12.35□□□□□ -0.43
HOXD11-202ENST00000498438 ZNF56Q15929 161 aa12.35□□□□□ -0.43
HOXD11-202ENST00000498438 DAZAP1Q96EP5 407 aaKnown RBP12.35□□□□□ -0.43
HOXD11-202ENST00000498438 GZMBP10144 247 aa12.34□□□□□ -0.43
HOXD11-202ENST00000498438 TAGLN2P37802 199 aaKnown RBP12.34□□□□□ -0.43
HOXD11-202ENST00000498438 RAB4BP61018 213 aa12.34□□□□□ -0.43
HOXD11-202ENST00000498438 RPL36AP83881 106 aaKnown RBP12.34□□□□□ -0.43
HOXD11-202ENST00000498438 OR2D3Q8NGH3 330 aa12.34□□□□□ -0.43
HOXD11-202ENST00000498438 RPL36ALQ969Q0 106 aaKnown RBP12.34□□□□□ -0.43
HOXD11-202ENST00000498438 PSCAO43653 123 aa12.33□□□□□ -0.44
HOXD11-202ENST00000498438 LAGE3Q14657 143 aa12.33□□□□□ -0.44
HOXD11-202ENST00000498438 TPPP3Q9BW30 176 aa12.33□□□□□ -0.44
HOXD11-202ENST00000498438 TRBV7-3A0A075B6L6 115 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 A0A1B0GVG6 124 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 RBFOX3A6NFN3 312 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 P01737 135 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 IGLC6P0CF74 106 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 NKX2-5P52952 324 aaPredicted RBP12.32□□□□□ -0.44
HOXD11-202ENST00000498438 RPS20P60866 119 aaKnown RBP12.32□□□□□ -0.44
HOXD11-202ENST00000498438 UBE2D3P61077 147 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 UBE2D2P62837 147 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 CDPF1Q6NVV7 123 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 FER1L6-AS1Q8NA97 138 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 OR10G8Q8NGN5 311 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 AP1S3Q96PC3 154 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 KRTAP17-1Q9BYP8 105 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 PGPEP1Q9NXJ5 209 aa12.32□□□□□ -0.44
HOXD11-202ENST00000498438 BLOC1S1P78537 153 aa12.31□□□□□ -0.44
HOXD11-202ENST00000498438 NEXN-AS1Q8NBZ9 246 aa12.31□□□□□ -0.44
HOXD11-202ENST00000498438 BIN3Q9NQY0 253 aa12.31□□□□□ -0.44
HOXD11-202ENST00000498438 F5H697 171 aa12.3□□□□□ -0.44
HOXD11-202ENST00000498438 SMIM17P0DL12 118 aa12.3□□□□□ -0.44
HOXD11-202ENST00000498438 DAZ4Q86SG3 579 aaKnown RBP12.3□□□□□ -0.44
HOXD11-202ENST00000498438 DAZ3Q9NR90 486 aaKnown RBP12.3□□□□□ -0.44
HOXD11-202ENST00000498438 KIF25-AS1Q9Y6Z4 181 aa12.3□□□□□ -0.44
HOXD11-202ENST00000498438 XKRY2A2RUG3 117 aa12.29□□□□□ -0.44
HOXD11-202ENST00000498438 NIT1Q86X76 327 aa12.29□□□□□ -0.44
HOXD11-202ENST00000498438 LRCOL1A6NCL2 159 aa12.28□□□□□ -0.44
HOXD11-202ENST00000498438 LYPD6BQ8NI32 183 aa12.28□□□□□ -0.44
HOXD11-202ENST00000498438 URGCP-MRPS24S4R325 110 aa12.28□□□□□ -0.44
HOXD11-202ENST00000498438 ABCA13Q86UQ4 5058 aa12.27□□□□□ -0.45
HOXD11-202ENST00000498438 K7EN84 100 aa12.27□□□□□ -0.45
HOXD11-202ENST00000498438 CACNG7P62955 275 aa12.27□□□□□ -0.45
HOXD11-202ENST00000498438 MAPKAPK5-AS1Q8N8E1 139 aa12.27□□□□□ -0.45
HOXD11-202ENST00000498438 NUDT10Q8NFP7 164 aa12.27□□□□□ -0.45
HOXD11-202ENST00000498438 NUDT11Q96G61 164 aa12.27□□□□□ -0.45
HOXD11-202ENST00000498438 KRTAP4-5Q9BYR2 181 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms