RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 FAM74A4Q5TZK3 123 aa10.59□□□□□ -0.71
HDAC4-213ENST00000496347 C11orf52Q96A22 123 aa10.59□□□□□ -0.71
HDAC4-213ENST00000496347 SFRP2Q96HF1 295 aa10.59□□□□□ -0.71
HDAC4-213ENST00000496347 MLST8Q9BVC4 326 aa10.59□□□□□ -0.71
HDAC4-213ENST00000496347 JPT2Q9H910 190 aa10.59□□□□□ -0.71
HDAC4-213ENST00000496347 GAGE12JA6NER3 117 aa10.58□□□□□ -0.72
HDAC4-213ENST00000496347 IBA57-AS1B1ANH7 110 aa10.58□□□□□ -0.72
HDAC4-213ENST00000496347 TEX46H3BTG2 121 aa10.58□□□□□ -0.72
HDAC4-213ENST00000496347 GAGE1Q13065 139 aa10.58□□□□□ -0.72
HDAC4-213ENST00000496347 GAGE4Q13068 117 aa10.58□□□□□ -0.72
HDAC4-213ENST00000496347 GAGE5Q13069 117 aa10.58□□□□□ -0.72
HDAC4-213ENST00000496347 GAGE13Q4V321 117 aa10.58□□□□□ -0.72
HDAC4-213ENST00000496347 BAGE2Q86Y30 109 aa10.58□□□□□ -0.72
HDAC4-213ENST00000496347 C14orf178Q8N769 122 aaPredicted RBP10.58□□□□□ -0.72
HDAC4-213ENST00000496347 GNG13Q9P2W3 67 aa10.58□□□□□ -0.72
HDAC4-213ENST00000496347 TRBV10-1A0A0K0K1A3 114 aa10.57□□□□□ -0.72
HDAC4-213ENST00000496347 RPL35P42766 123 aaKnown RBP10.57□□□□□ -0.72
HDAC4-213ENST00000496347 MAPKAPK5-AS1Q8N8E1 139 aa10.57□□□□□ -0.72
HDAC4-213ENST00000496347 A0A087WWL8 130 aa10.56□□□□□ -0.72
HDAC4-213ENST00000496347 PSCAO43653 123 aa10.56□□□□□ -0.72
HDAC4-213ENST00000496347 IGHV3-30P01768 117 aa10.55□□□□□ -0.72
HDAC4-213ENST00000496347 IGHV3-33P01772 117 aa10.55□□□□□ -0.72
HDAC4-213ENST00000496347 OR5AL1P0C617 328 aa10.55□□□□□ -0.72
HDAC4-213ENST00000496347 IGHV3-30-3P0DP02 117 aa10.55□□□□□ -0.72
HDAC4-213ENST00000496347 IGHV3-30-5P0DP03 117 aa10.55□□□□□ -0.72
HDAC4-213ENST00000496347 SULT1A2P50226 295 aa10.55□□□□□ -0.72
HDAC4-213ENST00000496347 SMIM12Q96EX1 92 aa10.55□□□□□ -0.72
HDAC4-213ENST00000496347 SNAI2O43623 268 aa10.54□□□□□ -0.72
HDAC4-213ENST00000496347 C1QBP02746 253 aa10.54□□□□□ -0.72
HDAC4-213ENST00000496347 RPL19P84098 196 aaKnown RBP10.54□□□□□ -0.72
HDAC4-213ENST00000496347 MEF2BQ02080 365 aaPredicted RBP10.54□□□□□ -0.72
HDAC4-213ENST00000496347 TOR2AQ5JU69 321 aa10.54□□□□□ -0.72
HDAC4-213ENST00000496347 PRR27Q6MZM9 219 aa10.54□□□□□ -0.72
HDAC4-213ENST00000496347 SLC51BQ86UW2 128 aa10.54□□□□□ -0.72
HDAC4-213ENST00000496347 OR10AG1Q8NH19 301 aa10.54□□□□□ -0.72
HDAC4-213ENST00000496347 DERL1Q9BUN8 251 aa10.54□□□□□ -0.72
HDAC4-213ENST00000496347 Q9HAA7 133 aa10.54□□□□□ -0.72
HDAC4-213ENST00000496347 Q9UF83 564 aa10.54□□□□□ -0.72
HDAC4-213ENST00000496347 PDE6DO43924 150 aa10.53□□□□□ -0.72
HDAC4-213ENST00000496347 IFNA1P01562 189 aa10.53□□□□□ -0.72
HDAC4-213ENST00000496347 CCL20P78556 96 aa10.53□□□□□ -0.72
HDAC4-213ENST00000496347 RPL36AP83881 106 aaKnown RBP10.53□□□□□ -0.72
HDAC4-213ENST00000496347 CENPWQ5EE01 88 aa10.53□□□□□ -0.72
HDAC4-213ENST00000496347 Q8N1X5 172 aa10.53□□□□□ -0.72
HDAC4-213ENST00000496347 NTN5Q8WTR8 489 aaPredicted RBP10.53□□□□□ -0.72
HDAC4-213ENST00000496347 RPL36ALQ969Q0 106 aaKnown RBP10.53□□□□□ -0.72
HDAC4-213ENST00000496347 SSBP4Q9BWG4 385 aaPredicted RBP10.53□□□□□ -0.72
HDAC4-213ENST00000496347 TRAV8-3A0A0A6YYJ7 113 aa10.52□□□□□ -0.73
HDAC4-213ENST00000496347 LRCOL1A6NCL2 159 aa10.52□□□□□ -0.73
HDAC4-213ENST00000496347 RAB4BP61018 213 aa10.52□□□□□ -0.73
HDAC4-213ENST00000496347 OR10G8Q8NGN5 311 aa10.52□□□□□ -0.73
HDAC4-213ENST00000496347 TM2D2Q9BX73 214 aa10.52□□□□□ -0.73
HDAC4-213ENST00000496347 TRBV7-3A0A075B6L6 115 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 BCL2P10415 239 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 TAGLN2P37802 199 aaKnown RBP10.51□□□□□ -0.73
HDAC4-213ENST00000496347 UBE2D3P61077 147 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 UBE2D2P62837 147 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 ZNF56Q15929 161 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 SPANXN1Q5VSR9 72 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 Q6ZNX1 250 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 Q8N3U1 123 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 AP1S3Q96PC3 154 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 CHCHD7Q9BUK0 85 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 KRTAP4-5Q9BYR2 181 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 URGCP-MRPS24S4R325 110 aa10.51□□□□□ -0.73
HDAC4-213ENST00000496347 FUSP35637 526 aaKnown RBP eCLIP10.5□□□□□ -0.73
HDAC4-213ENST00000496347 GNG4P50150 75 aa10.5□□□□□ -0.73
HDAC4-213ENST00000496347 AKAP14Q86UN6 197 aa10.5□□□□□ -0.73
HDAC4-213ENST00000496347 RPS20P60866 119 aaKnown RBP10.49□□□□□ -0.73
HDAC4-213ENST00000496347 NIT1Q86X76 327 aa10.49□□□□□ -0.73
HDAC4-213ENST00000496347 Q8N814 137 aa10.49□□□□□ -0.73
HDAC4-213ENST00000496347 IGLV5-52A0A0A0MRZ9 124 aa10.48□□□□□ -0.73
HDAC4-213ENST00000496347 GCSHP23434 173 aa10.48□□□□□ -0.73
HDAC4-213ENST00000496347 DAZAP1Q96EP5 407 aaKnown RBP10.48□□□□□ -0.73
HDAC4-213ENST00000496347 BIN3Q9NQY0 253 aa10.48□□□□□ -0.73
HDAC4-213ENST00000496347 VAX2Q9UIW0 290 aa10.48□□□□□ -0.73
HDAC4-213ENST00000496347 COX11Q9Y6N1 276 aa10.48□□□□□ -0.73
HDAC4-213ENST00000496347 XKRY2A2RUG3 117 aa10.47□□□□□ -0.73
HDAC4-213ENST00000496347 C19orf71A6NCJ1 209 aa10.47□□□□□ -0.73
HDAC4-213ENST00000496347 IGLV2-8P01709 118 aa10.47□□□□□ -0.73
HDAC4-213ENST00000496347 SMIM17P0DL12 118 aa10.47□□□□□ -0.73
HDAC4-213ENST00000496347 KRTAP10-1P60331 282 aa10.47□□□□□ -0.73
HDAC4-213ENST00000496347 KCNIP4Q6PIL6 250 aa10.47□□□□□ -0.73
HDAC4-213ENST00000496347 DAZ4Q86SG3 579 aaKnown RBP10.47□□□□□ -0.73
HDAC4-213ENST00000496347 C9orf62Q8N4C0 152 aa10.47□□□□□ -0.73
HDAC4-213ENST00000496347 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.47□□□□□ -0.73
HDAC4-213ENST00000496347 NEXN-AS1Q8NBZ9 246 aa10.47□□□□□ -0.73
HDAC4-213ENST00000496347 RMI2Q96E14 147 aa10.47□□□□□ -0.73
HDAC4-213ENST00000496347 DAZ3Q9NR90 486 aaKnown RBP10.47□□□□□ -0.73
HDAC4-213ENST00000496347 TRBV20OR9-2A0A075B6H5 130 aa10.46□□□□□ -0.73
HDAC4-213ENST00000496347 A0A087WX48 190 aa10.46□□□□□ -0.73
HDAC4-213ENST00000496347 P01737 135 aa10.46□□□□□ -0.73
HDAC4-213ENST00000496347 IGLC6P0CF74 106 aa10.46□□□□□ -0.73
HDAC4-213ENST00000496347 ELOBQ15370 118 aa10.46□□□□□ -0.73
HDAC4-213ENST00000496347 FER1L6-AS1Q8NA97 138 aa10.46□□□□□ -0.73
HDAC4-213ENST00000496347 OR2D3Q8NGH3 330 aa10.46□□□□□ -0.73
HDAC4-213ENST00000496347 MED9Q9NWA0 146 aa10.46□□□□□ -0.73
HDAC4-213ENST00000496347 TRBV6-8A0A0A6YYG3 113 aa10.45□□□□□ -0.74
HDAC4-213ENST00000496347 MUC21A0A0G2JKD1 596 aa10.45□□□□□ -0.74
HDAC4-213ENST00000496347 MUC21A0A140T8X8 626 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms