RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 ZNF407Q9C0G0 2248 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 F8W1H4 67 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 K7EIM0 57 aa10.12□□□□□ -0.79
COL6A3-212ENST00000491769 DEFB1P60022 68 aa10.12□□□□□ -0.79
COL6A3-212ENST00000491769 PYY3Q5JQD4 70 aa10.12□□□□□ -0.79
COL6A3-212ENST00000491769 ZNF524Q96C55 264 aa10.12□□□□□ -0.79
COL6A3-212ENST00000491769 IGLV2-18A0A075B6J9 118 aa10.12□□□□□ -0.79
COL6A3-212ENST00000491769 POU2AF1Q16633 256 aa10.12□□□□□ -0.79
COL6A3-212ENST00000491769 RSPO1Q2MKA7 263 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-212ENST00000491769 C7orf33Q8WU49 177 aa10.12□□□□□ -0.79
COL6A3-212ENST00000491769 TMEM263Q8WUH6 116 aaKnown RBP10.12□□□□□ -0.79
COL6A3-212ENST00000491769 PRORYQ9H606 182 aa10.11□□□□□ -0.79
COL6A3-212ENST00000491769 VWA8A3KMH1 1905 aa10.11□□□□□ -0.79
COL6A3-212ENST00000491769 K7EMI3 77 aa10.11□□□□□ -0.79
COL6A3-212ENST00000491769 CXCL5P42830 114 aa10.11□□□□□ -0.79
COL6A3-212ENST00000491769 FGF23Q9GZV9 251 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-212ENST00000491769 DYSFO75923 2080 aa10.11□□□□□ -0.79
COL6A3-212ENST00000491769 C12orf74Q32Q52 190 aa10.11□□□□□ -0.79
COL6A3-212ENST00000491769 TMEM61Q8N0U2 210 aa10.11□□□□□ -0.79
COL6A3-212ENST00000491769 PLXND1Q9Y4D7 1925 aa10.11□□□□□ -0.79
COL6A3-212ENST00000491769 H0YGX0 51 aa10.11□□□□□ -0.79
COL6A3-212ENST00000491769 FAM19A1Q7Z5A9 133 aa10.11□□□□□ -0.79
COL6A3-212ENST00000491769 MAP6D1Q9H9H5 199 aa10.1□□□□□ -0.79
COL6A3-212ENST00000491769 LOXL1Q08397 574 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-212ENST00000491769 K7EMT4 169 aa10.1□□□□□ -0.79
COL6A3-212ENST00000491769 MUSTN1Q8IVN3 82 aa10.1□□□□□ -0.79
COL6A3-212ENST00000491769 RPL39P62891 51 aaKnown RBP10.1□□□□□ -0.79
COL6A3-212ENST00000491769 TRBV12-3P01733 135 aa10.1□□□□□ -0.79
COL6A3-212ENST00000491769 IGKV3D-7A0A0C4DH55 119 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 A0A1W2PPM0 123 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 KMT2EQ8IZD2 1858 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 K7EN84 100 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 IGHV4-31P0DP07 118 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 KIR2DL5BQ8NHK3 375 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 C1orf147Q96MC9 270 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-212ENST00000491769 K7EP34 96 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 ADCYAP1P18509 176 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 Q8N7P7 452 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 NOTCH3Q9UM47 2321 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 ZSWIM8A7E2V4 1837 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 PRAC2D3DTV9 90 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 LRRC75A-AS1Q8N1F1 130 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 UBE2D4Q9Y2X8 147 aa10.09□□□□□ -0.79
COL6A3-212ENST00000491769 TMEM89A2RUT3 159 aa10.08□□□□□ -0.8
COL6A3-212ENST00000491769 MGAMO43451 1857 aa10.08□□□□□ -0.8
COL6A3-212ENST00000491769 H3BQ85 93 aa10.08□□□□□ -0.8
COL6A3-212ENST00000491769 C19orf84I3L1E1 186 aa10.08□□□□□ -0.8
COL6A3-212ENST00000491769 NPSP0C0P6 89 aa10.08□□□□□ -0.8
COL6A3-212ENST00000491769 MSRB1Q9NZV6 116 aa10.08□□□□□ -0.8
COL6A3-212ENST00000491769 FAM222AQ5U5X8 452 aa10.08□□□□□ -0.8
COL6A3-212ENST00000491769 SPTAN1Q13813 2472 aaKnown RBP10.07□□□□□ -0.8
COL6A3-212ENST00000491769 FRMPD3Q5JV73 1810 aa10.07□□□□□ -0.8
COL6A3-212ENST00000491769 A6NDX4 124 aa10.07□□□□□ -0.8
COL6A3-212ENST00000491769 LY6G6DO95868 133 aa10.07□□□□□ -0.8
COL6A3-212ENST00000491769 LINC00269Q8N2A0 174 aa10.07□□□□□ -0.8
COL6A3-212ENST00000491769 SPANXDQ9BXN6 97 aa10.07□□□□□ -0.8
COL6A3-212ENST00000491769 ACYP1P07311 99 aa10.07□□□□□ -0.8
COL6A3-212ENST00000491769 COX7BP24311 80 aa10.07□□□□□ -0.8
COL6A3-212ENST00000491769 LINC00482Q8N8I6 264 aa10.06□□□□□ -0.8
COL6A3-212ENST00000491769 SIRPDQ9H106 197 aa10.06□□□□□ -0.8
COL6A3-212ENST00000491769 MYLKQ15746 1914 aa10.06□□□□□ -0.8
COL6A3-212ENST00000491769 LECT2O14960 151 aa10.06□□□□□ -0.8
COL6A3-212ENST00000491769 PSMB8P28062 276 aa10.06□□□□□ -0.8
COL6A3-212ENST00000491769 CITED1Q99966 193 aa10.06□□□□□ -0.8
COL6A3-212ENST00000491769 TEX22C9J3V5 150 aa10.06□□□□□ -0.8
COL6A3-212ENST00000491769 UNQ9165/PRO28630Q6UXU0 137 aa10.06□□□□□ -0.8
COL6A3-212ENST00000491769 NCKAP5O14513 1909 aa10.05□□□□□ -0.8
COL6A3-212ENST00000491769 IGKV1D-37A0A075B6S9 117 aa10.05□□□□□ -0.8
COL6A3-212ENST00000491769 MDFICQ9P1T7 246 aa10.05□□□□□ -0.8
COL6A3-212ENST00000491769 FAM19A5Q7Z5A7 132 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-212ENST00000491769 ZNF843Q8N446 348 aa10.05□□□□□ -0.8
COL6A3-212ENST00000491769 MIR7-3HGQ8N6C7 128 aa10.05□□□□□ -0.8
COL6A3-212ENST00000491769 PCP2Q8IVA1 136 aa10.05□□□□□ -0.8
COL6A3-212ENST00000491769 REG3AQ06141 175 aa10.05□□□□□ -0.8
COL6A3-212ENST00000491769 IL15RAQ13261 267 aa10.05□□□□□ -0.8
COL6A3-212ENST00000491769 PLXNA3P51805 1871 aa10.05□□□□□ -0.8
COL6A3-212ENST00000491769 MAJINQ3KP22 176 aa10.05□□□□□ -0.8
COL6A3-212ENST00000491769 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-212ENST00000491769 C20orf144Q9BQM9 153 aa10.04□□□□□ -0.8
COL6A3-212ENST00000491769 NBASA2RRP1 2371 aa10.04□□□□□ -0.8
COL6A3-212ENST00000491769 ZGRF1Q86YA3 2104 aa10.04□□□□□ -0.8
COL6A3-212ENST00000491769 DOCK11Q5JSL3 2073 aa10.04□□□□□ -0.8
COL6A3-212ENST00000491769 PLCE1Q9P212 2302 aa10.04□□□□□ -0.8
COL6A3-212ENST00000491769 ZNF747Q9BV97 191 aa10.04□□□□□ -0.8
COL6A3-212ENST00000491769 WI2-2373I1.2A0A1W2PRP0 233 aa10.03□□□□□ -0.8
COL6A3-212ENST00000491769 HELZP42694 1942 aaKnown RBP10.03□□□□□ -0.8
COL6A3-212ENST00000491769 K7EP13 123 aa10.03□□□□□ -0.8
COL6A3-212ENST00000491769 NACAE9PAV3 2078 aa10.03□□□□□ -0.8
COL6A3-212ENST00000491769 EML6Q6ZMW3 1958 aa10.03□□□□□ -0.8
COL6A3-212ENST00000491769 SIVA1O15304 175 aa10.03□□□□□ -0.8
COL6A3-212ENST00000491769 TSC2P49815 1807 aa10.03□□□□□ -0.8
COL6A3-212ENST00000491769 A4D1N5 150 aa10.03□□□□□ -0.8
COL6A3-212ENST00000491769 LINC01620Q4KN68 170 aa10.03□□□□□ -0.8
COL6A3-212ENST00000491769 HIST2H2BDQ6DRA6 164 aa10.03□□□□□ -0.8
COL6A3-212ENST00000491769 Q6YL49 198 aa10.03□□□□□ -0.8
COL6A3-212ENST00000491769 Q6ZTI0 123 aa10.02□□□□□ -0.81
COL6A3-212ENST00000491769 HEATR5AQ86XA9 2040 aa10.02□□□□□ -0.81
COL6A3-212ENST00000491769 TNFRSF13BO14836 293 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-212ENST00000491769 TRBV10-2A0A0K0K1G8 114 aa10.02□□□□□ -0.81
COL6A3-212ENST00000491769 A0A0J9YX75 114 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms