RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 H3BUA1 57 aa5.65□□□□□ -1.5
SYNE1-228ENST00000490135 PLXND1Q9Y4D7 1925 aa5.65□□□□□ -1.51
SYNE1-228ENST00000490135 PDE6GP18545 87 aa5.65□□□□□ -1.51
SYNE1-228ENST00000490135 WDR86Q86TI4 376 aa5.65□□□□□ -1.51
SYNE1-228ENST00000490135 IGKV1-16P04430 117 aa5.65□□□□□ -1.51
SYNE1-228ENST00000490135 C9orf85Q96MD7 179 aa5.65□□□□□ -1.51
SYNE1-228ENST00000490135 MDC1Q14676 2089 aaKnown RBP5.64□□□□□ -1.51
SYNE1-228ENST00000490135 KMT2EQ8IZD2 1858 aa5.64□□□□□ -1.51
SYNE1-228ENST00000490135 TMEM14CQ9P0S9 112 aa5.64□□□□□ -1.51
SYNE1-228ENST00000490135 SBF1O95248 1867 aa5.64□□□□□ -1.51
SYNE1-228ENST00000490135 MBD6Q96DN6 1003 aa5.64□□□□□ -1.51
SYNE1-228ENST00000490135 TRBV7-3A0A075B6L6 115 aa5.64□□□□□ -1.51
SYNE1-228ENST00000490135 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-228ENST00000490135 URB1-AS1Q96HZ7 61 aa5.64□□□□□ -1.51
SYNE1-228ENST00000490135 THSD7AQ9UPZ6 1657 aa5.64□□□□□ -1.51
SYNE1-228ENST00000490135 CD59P13987 128 aa5.64□□□□□ -1.51
SYNE1-228ENST00000490135 UBE2D1P51668 147 aa5.64□□□□□ -1.51
SYNE1-228ENST00000490135 FGF23Q9GZV9 251 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-228ENST00000490135 TRBV7-7A0A0K0K1E9 115 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 BPY2O14599 106 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 COX7BP24311 80 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 AHCTF1Q8WYP5 2266 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 TMEM256-PLSCR3K7ERE1 68 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 MPDZO75970 2070 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 PLXNA1Q9UIW2 1896 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 F5P12259 2224 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 IGLV3-19P01714 112 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 NHLRC4P0CG21 123 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-228ENST00000490135 SPAG11BQ08648 103 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 ZNF295-AS1Q8N0V1 137 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 UBE2D4Q9Y2X8 147 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 PRO0461Q9UI25 63 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 NUP210LQ5VU65 1888 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 CRYGAP11844 174 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 GATA1P15976 413 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-228ENST00000490135 MYCNOSP40205 109 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 CRIPAKQ8N1N5 446 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 NDUFA4L2Q9NRX3 87 aa5.63□□□□□ -1.51
SYNE1-228ENST00000490135 K7EM74 188 aa5.62□□□□□ -1.51
SYNE1-228ENST00000490135 LECT2O14960 151 aa5.62□□□□□ -1.51
SYNE1-228ENST00000490135 SPRY2O43597 315 aa5.62□□□□□ -1.51
SYNE1-228ENST00000490135 HIGD2AQ9BW72 106 aa5.62□□□□□ -1.51
SYNE1-228ENST00000490135 WDR90Q96KV7 1748 aa5.62□□□□□ -1.51
SYNE1-228ENST00000490135 GNRH2O43555 120 aa5.62□□□□□ -1.51
SYNE1-228ENST00000490135 CTSGP08311 255 aa5.62□□□□□ -1.51
SYNE1-228ENST00000490135 POLR2AP24928 1970 aaKnown RBP5.62□□□□□ -1.51
SYNE1-228ENST00000490135 IGKV2-24A0A0C4DH68 120 aa5.62□□□□□ -1.51
SYNE1-228ENST00000490135 ESM1Q9NQ30 184 aa5.62□□□□□ -1.51
SYNE1-228ENST00000490135 COL5A3P25940 1745 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-228ENST00000490135 ZNF833PQ6ZTB9 187 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 APRG1Q8IVJ8 170 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 TOMM6Q96B49 74 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 TRIAP1O43715 76 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 UNC13CQ8NB66 2214 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 IGLV3-9A0A075B6K5 115 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 TRBV30A0A0K0K1B3 111 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 WISP1O95388 367 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 SMCPP49901 116 aaPredicted RBP5.61□□□□□ -1.51
SYNE1-228ENST00000490135 C7orf33Q8WU49 177 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 SNURFQ9Y675 71 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 H7C423 109 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 ODF3Q96PU9 254 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 HHLA3Q9XRX5 114 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 C19orf71A6NCJ1 209 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 VPREB1P12018 145 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 UBE2D3P61077 147 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 UBE2D2P62837 147 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 ARTNQ5T4W7 220 aa5.61□□□□□ -1.51
SYNE1-228ENST00000490135 TICRRQ7Z2Z1 1910 aa5.6□□□□□ -1.51
SYNE1-228ENST00000490135 CRIP2P52943 208 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-228ENST00000490135 KIF26BQ2KJY2 2108 aa5.6□□□□□ -1.51
SYNE1-228ENST00000490135 A0A087WZ39 114 aa5.6□□□□□ -1.51
SYNE1-228ENST00000490135 RSPO1Q2MKA7 263 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-228ENST00000490135 SMAD5-AS1Q9Y6J3 95 aa5.6□□□□□ -1.51
SYNE1-228ENST00000490135 A0A096LNI7 61 aa5.6□□□□□ -1.51
SYNE1-228ENST00000490135 LOXP28300 417 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-228ENST00000490135 ZNRD1Q9P1U0 126 aa5.6□□□□□ -1.51
SYNE1-228ENST00000490135 OBSL1O75147 1896 aa5.6□□□□□ -1.51
SYNE1-228ENST00000490135 FAM19A1Q7Z5A9 133 aa5.6□□□□□ -1.51
SYNE1-228ENST00000490135 KLK12Q9UKR0 248 aa5.6□□□□□ -1.51
SYNE1-228ENST00000490135 CABIN1Q9Y6J0 2220 aa5.6□□□□□ -1.51
SYNE1-228ENST00000490135 NDUFC1O43677 76 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 FNDC1Q4ZHG4 1894 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-228ENST00000490135 MYO7AQ13402 2215 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 C11orf86A6NJI1 115 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 HELZP42694 1942 aaKnown RBP5.59□□□□□ -1.51
SYNE1-228ENST00000490135 PLXNB3Q9ULL4 1909 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 PLXNA2O75051 1894 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 RP1P56715 2156 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 DEFB136Q30KP8 78 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 DEFB112Q30KQ8 113 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 IGHV4-30-2A0A087WSY4 118 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 SPRNQ5BIV9 151 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 LENEPQ9Y5L5 61 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 U3KQK5 164 aa5.59□□□□□ -1.51
SYNE1-228ENST00000490135 NLRC5Q86WI3 1866 aa5.59□□□□□ -1.52
SYNE1-228ENST00000490135 A6NED7 52 aa5.59□□□□□ -1.52
SYNE1-228ENST00000490135 ZNF22P17026 224 aaPredicted RBP5.59□□□□□ -1.52
SYNE1-228ENST00000490135 ESPL1Q14674 2120 aa5.59□□□□□ -1.52
SYNE1-228ENST00000490135 HIST2H2BDQ6DRA6 164 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms