RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 TMEM219Q86XT9 240 aa11.72□□□□□ -0.53
HLA-DQB1-209ENST00000487676 LINC00643Q86TS7 51 aa11.72□□□□□ -0.53
HLA-DQB1-209ENST00000487676 IGHV3OR16-12A0A075B7B8 117 aa11.72□□□□□ -0.53
HLA-DQB1-209ENST00000487676 LGALS9O00182 355 aa11.72□□□□□ -0.53
HLA-DQB1-209ENST00000487676 IGHV3-30P01768 117 aa11.72□□□□□ -0.53
HLA-DQB1-209ENST00000487676 IGHV3-30-5P0DP03 117 aa11.72□□□□□ -0.53
HLA-DQB1-209ENST00000487676 DAZ1Q9NQZ3 744 aaKnown RBP11.71□□□□□ -0.53
HLA-DQB1-209ENST00000487676 UQCRQO14949 82 aa11.71□□□□□ -0.54
HLA-DQB1-209ENST00000487676 CLEC2BQ92478 149 aa11.71□□□□□ -0.54
HLA-DQB1-209ENST00000487676 FAM110AQ9BQ89 295 aa11.71□□□□□ -0.54
HLA-DQB1-209ENST00000487676 NDUFA4O00483 81 aa11.71□□□□□ -0.54
HLA-DQB1-209ENST00000487676 LY6HO94772 140 aa11.71□□□□□ -0.54
HLA-DQB1-209ENST00000487676 LINC00158P58513 81 aa11.71□□□□□ -0.54
HLA-DQB1-209ENST00000487676 LINC01587Q99440 93 aa11.71□□□□□ -0.54
HLA-DQB1-209ENST00000487676 SOCS3O14543 225 aa11.7□□□□□ -0.54
HLA-DQB1-209ENST00000487676 IGHV7-81A0A0B4J1V7 117 aa11.69□□□□□ -0.54
HLA-DQB1-209ENST00000487676 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.69□□□□□ -0.54
HLA-DQB1-209ENST00000487676 F6UB75 175 aa11.69□□□□□ -0.54
HLA-DQB1-209ENST00000487676 PRO0461Q9UI25 63 aa11.69□□□□□ -0.54
HLA-DQB1-209ENST00000487676 IGHV1OR15-1A0A075B7D0 117 aa11.69□□□□□ -0.54
HLA-DQB1-209ENST00000487676 TRBV30A0A0K0K1B3 111 aa11.69□□□□□ -0.54
HLA-DQB1-209ENST00000487676 MRPS12O15235 138 aaKnown RBP11.69□□□□□ -0.54
HLA-DQB1-209ENST00000487676 UBE2E1P51965 193 aa11.69□□□□□ -0.54
HLA-DQB1-209ENST00000487676 CENPVL3A0A0U1RRI6 287 aa11.69□□□□□ -0.54
HLA-DQB1-209ENST00000487676 TRAV13-1A0A0B4J241 112 aa11.68□□□□□ -0.54
HLA-DQB1-209ENST00000487676 OVOL3O00110 214 aa11.68□□□□□ -0.54
HLA-DQB1-209ENST00000487676 IGHV1-69P01742 117 aa11.68□□□□□ -0.54
HLA-DQB1-209ENST00000487676 SAA4P35542 130 aa11.68□□□□□ -0.54
HLA-DQB1-209ENST00000487676 C5orf47Q569G3 176 aa11.68□□□□□ -0.54
HLA-DQB1-209ENST00000487676 GATA3P23771 443 aa11.68□□□□□ -0.54
HLA-DQB1-209ENST00000487676 SEM1Q6ZVN7 128 aa11.68□□□□□ -0.54
HLA-DQB1-209ENST00000487676 PEMTQ9UBM1 199 aa11.67□□□□□ -0.54
HLA-DQB1-209ENST00000487676 DNAJC30Q96LL9 226 aa11.67□□□□□ -0.54
HLA-DQB1-209ENST00000487676 PAX4O43316 350 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 SYNJ2BPP57105 145 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 PIP4P2Q8N4L2 257 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 A0A0J9YXY3 114 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 TRIAP1O43715 76 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 RNASE13Q5GAN3 156 aaKnown RBP11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 ZNF415Q09FC8 603 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 IGFL2Q6UWQ7 119 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 COX8CQ7Z4L0 72 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 C3orf22Q8N5N4 141 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 IGHV3-30-3P0DP02 117 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 IMUPQ9GZP8 106 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 KLK9Q9UKQ9 250 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 SMAD5-AS1Q9Y6J3 95 aa11.66□□□□□ -0.54
HLA-DQB1-209ENST00000487676 A0A1B0GX51 115 aa11.65□□□□□ -0.54
HLA-DQB1-209ENST00000487676 PRR30Q53SZ7 412 aaPredicted RBP11.65□□□□□ -0.54
HLA-DQB1-209ENST00000487676 TRAV13-2A0A0B4J235 113 aa11.65□□□□□ -0.54
HLA-DQB1-209ENST00000487676 RS1O15537 224 aa11.65□□□□□ -0.54
HLA-DQB1-209ENST00000487676 SPINK13Q1W4C9 94 aa11.65□□□□□ -0.54
HLA-DQB1-209ENST00000487676 Q6ZS46 218 aa11.65□□□□□ -0.54
HLA-DQB1-209ENST00000487676 TMEM86BQ8N661 226 aa11.64□□□□□ -0.55
HLA-DQB1-209ENST00000487676 TNRC6BQ9UPQ9 1833 aaKnown RBP11.64□□□□□ -0.55
HLA-DQB1-209ENST00000487676 IGHV4-4A0A075B6R2 117 aa11.64□□□□□ -0.55
HLA-DQB1-209ENST00000487676 IGFL3Q6UXB1 125 aa11.64□□□□□ -0.55
HLA-DQB1-209ENST00000487676 DSCAMO60469 2012 aa11.64□□□□□ -0.55
HLA-DQB1-209ENST00000487676 C20orf203Q8NBC4 194 aa11.64□□□□□ -0.55
HLA-DQB1-209ENST00000487676 IGHV7-4-1A0A0J9YVY3 117 aa11.63□□□□□ -0.55
HLA-DQB1-209ENST00000487676 KNCNA6PVL3 124 aa11.63□□□□□ -0.55
HLA-DQB1-209ENST00000487676 C11orf21Q9P2W6 132 aa11.63□□□□□ -0.55
HLA-DQB1-209ENST00000487676 OPRPNQ99935 248 aaPredicted RBP11.63□□□□□ -0.55
HLA-DQB1-209ENST00000487676 Q9H8V8 135 aa11.63□□□□□ -0.55
HLA-DQB1-209ENST00000487676 TRAV12-2A0A075B6T6 113 aa11.63□□□□□ -0.55
HLA-DQB1-209ENST00000487676 RPL36AP83881 106 aaKnown RBP11.63□□□□□ -0.55
HLA-DQB1-209ENST00000487676 RPL36ALQ969Q0 106 aaKnown RBP11.63□□□□□ -0.55
HLA-DQB1-209ENST00000487676 IGHV1-58A0A0C4DH39 117 aa11.63□□□□□ -0.55
HLA-DQB1-209ENST00000487676 SMCPP49901 116 aaPredicted RBP11.63□□□□□ -0.55
HLA-DQB1-209ENST00000487676 IGLV2-18A0A075B6J9 118 aa11.62□□□□□ -0.55
HLA-DQB1-209ENST00000487676 NDUFA7O95182 113 aa11.62□□□□□ -0.55
HLA-DQB1-209ENST00000487676 HERVK_113P63121 156 aa11.62□□□□□ -0.55
HLA-DQB1-209ENST00000487676 MIAQ16674 131 aa11.62□□□□□ -0.55
HLA-DQB1-209ENST00000487676 TMEM223A0PJW6 202 aa11.62□□□□□ -0.55
HLA-DQB1-209ENST00000487676 SHISA2Q6UWI4 295 aa11.62□□□□□ -0.55
HLA-DQB1-209ENST00000487676 A0A1W2PNU3 283 aaPredicted RBP11.61□□□□□ -0.55
HLA-DQB1-209ENST00000487676 Q8N9W7 124 aa11.61□□□□□ -0.55
HLA-DQB1-209ENST00000487676 MDFICQ9P1T7 246 aa11.61□□□□□ -0.55
HLA-DQB1-209ENST00000487676 Q6ZQT7 251 aa11.61□□□□□ -0.55
HLA-DQB1-209ENST00000487676 ITLN2Q8WWU7 325 aaPredicted RBP11.61□□□□□ -0.55
HLA-DQB1-209ENST00000487676 ZNF22P17026 224 aaPredicted RBP11.61□□□□□ -0.55
HLA-DQB1-209ENST00000487676 TMEM263Q8WUH6 116 aaKnown RBP11.61□□□□□ -0.55
HLA-DQB1-209ENST00000487676 PIMREGQ9BSJ6 248 aa11.6□□□□□ -0.55
HLA-DQB1-209ENST00000487676 JPT2Q9H910 190 aa11.6□□□□□ -0.55
HLA-DQB1-209ENST00000487676 FAM240AA0A1B0GVK7 77 aa11.6□□□□□ -0.55
HLA-DQB1-209ENST00000487676 DAND5Q8N907 189 aa11.59□□□□□ -0.55
HLA-DQB1-209ENST00000487676 LINC01546A6NGU7 62 aa11.59□□□□□ -0.55
HLA-DQB1-209ENST00000487676 CRIP2P52943 208 aaPredicted RBP11.59□□□□□ -0.55
HLA-DQB1-209ENST00000487676 UBL5Q9BZL1 73 aa11.59□□□□□ -0.55
HLA-DQB1-209ENST00000487676 IGKV3D-7A0A0C4DH55 119 aa11.58□□□□□ -0.56
HLA-DQB1-209ENST00000487676 M0QXV9 152 aa11.58□□□□□ -0.56
HLA-DQB1-209ENST00000487676 RBMY1FQ15415 496 aaKnown RBP11.58□□□□□ -0.56
HLA-DQB1-209ENST00000487676 DEFB1P60022 68 aa11.57□□□□□ -0.56
HLA-DQB1-209ENST00000487676 AJUBAQ96IF1 538 aa11.57□□□□□ -0.56
HLA-DQB1-209ENST00000487676 ADAMTS20P59510 1910 aa11.57□□□□□ -0.56
HLA-DQB1-209ENST00000487676 IGHV3-38A0A0C4DH36 116 aa11.57□□□□□ -0.56
HLA-DQB1-209ENST00000487676 ARHGAP32A7KAX9 2087 aa11.57□□□□□ -0.56
HLA-DQB1-209ENST00000487676 H3BUX3 64 aa11.57□□□□□ -0.56
HLA-DQB1-209ENST00000487676 CRLF1O75462 422 aa11.57□□□□□ -0.56
HLA-DQB1-209ENST00000487676 MSRB2Q9Y3D2 182 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms