RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 ZNF415Q09FC8 603 aa4.79□□□□□ -1.64
USP48-208ENST00000479177 DEFB135Q30KP9 77 aa4.79□□□□□ -1.64
USP48-208ENST00000479177 ATP5L2Q7Z4Y8 100 aa4.79□□□□□ -1.64
USP48-208ENST00000479177 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.79□□□□□ -1.64
USP48-208ENST00000479177 OR10AG1Q8NH19 301 aa4.79□□□□□ -1.64
USP48-208ENST00000479177 RNASE8Q8TDE3 154 aaKnown RBP4.79□□□□□ -1.64
USP48-208ENST00000479177 FAM210BQ96KR6 192 aa4.79□□□□□ -1.64
USP48-208ENST00000479177 MDFICQ9P1T7 246 aa4.79□□□□□ -1.64
USP48-208ENST00000479177 TIMM8BQ9Y5J9 83 aaPredicted RBP4.79□□□□□ -1.64
USP48-208ENST00000479177 IGHV4-4A0A075B6R2 117 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 MUC21A0A0G2JKD1 596 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 MUC21A0A140T8X8 626 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 A0A1B0GW15 77 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 SPRY2O43597 315 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 HTN1P15515 57 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 AZU1P20160 251 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 CACNG7P62955 275 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 RIGQ13278 110 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 WDR73Q6P4I2 378 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 RASL11AQ6T310 242 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 TMEM136Q6ZRR5 245 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 Q6ZWC4 215 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 GATD1Q8NB37 220 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 TMEM263Q8WUH6 116 aaKnown RBP4.78□□□□□ -1.64
USP48-208ENST00000479177 BORCS7Q96B45 105 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 C16orf74Q96GX8 76 aa4.78□□□□□ -1.64
USP48-208ENST00000479177 NACAE9PAV3 2078 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 PRKDCP78527 4128 aaKnown RBP4.77□□□□□ -1.65
USP48-208ENST00000479177 PLAC8L1A1L4L8 177 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 RRN3P1Q2M238 152 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 COX19Q49B96 90 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 SPANXN1Q5VSR9 72 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 ZNF493Q6ZR52 646 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 ZFP82Q8N141 532 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 RNF183Q96D59 192 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 RCHY1Q96PM5 261 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 GSN-AS1Q9NRJ2 163 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 MSRB1Q9NZV6 116 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 PHLDA3Q9Y5J5 127 aa4.77□□□□□ -1.65
USP48-208ENST00000479177 COL7A1Q02388 2944 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 DNAH9Q9NYC9 4486 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 SMIM9A6NGZ8 99 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 SNURFLB1AK76 121 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 M0R2P5 195 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 M0R381 172 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 PHOX2AO14813 284 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 HLA-DQA1P01909 254 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 MT-ND6P03923 174 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 S100A8P05109 93 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 NTF3P20783 257 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 RPS10P46783 165 aaKnown RBP4.76□□□□□ -1.65
USP48-208ENST00000479177 CAMPP49913 170 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 TWIST1Q15672 202 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 OR11H2Q8NH07 326 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 PTH2Q96A98 100 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 AP1S3Q96PC3 154 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 SPXQ9BT56 116 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 GNB1LQ9BYB4 327 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 RETNQ9HD89 108 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 TP53TG1Q9Y2A0 90 aa4.76□□□□□ -1.65
USP48-208ENST00000479177 HUWE1Q7Z6Z7 4374 aaKnown RBP4.75□□□□□ -1.65
USP48-208ENST00000479177 IGHV4-28A0A0C4DH34 117 aa4.75□□□□□ -1.65
USP48-208ENST00000479177 TRGC1P0CF51 173 aa4.75□□□□□ -1.65
USP48-208ENST00000479177 NHLRC4P0CG21 123 aaPredicted RBP4.75□□□□□ -1.65
USP48-208ENST00000479177 MIFP14174 115 aa4.75□□□□□ -1.65
USP48-208ENST00000479177 RAB4BP61018 213 aa4.75□□□□□ -1.65
USP48-208ENST00000479177 SSTP61278 116 aa4.75□□□□□ -1.65
USP48-208ENST00000479177 DAZ2Q13117 558 aaKnown RBP4.75□□□□□ -1.65
USP48-208ENST00000479177 PIK3CD-AS1Q5SR53 167 aa4.75□□□□□ -1.65
USP48-208ENST00000479177 Q8NAQ8 132 aa4.75□□□□□ -1.65
USP48-208ENST00000479177 OVOL2Q9BRP0 275 aa4.75□□□□□ -1.65
USP48-208ENST00000479177 NDUFAF3Q9BU61 184 aa4.75□□□□□ -1.65
USP48-208ENST00000479177 TMEM191AQ9H0A3 160 aa4.75□□□□□ -1.65
USP48-208ENST00000479177 MRPL16Q9NX20 251 aaKnown RBP4.75□□□□□ -1.65
USP48-208ENST00000479177 TRGC2P03986 189 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 EVI2AP22794 236 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 SLAQ13239 276 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 ZNF876PQ49A33 203 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 FAM104BQ5XKR9 115 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 Q6ZTI0 123 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 SBSPONQ8IVN8 264 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 AMN1Q8IY45 258 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 LINC00612Q8N6U2 182 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 RASL10AQ92737 203 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 RNF185Q96GF1 192 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 TM2D3Q9BRN9 247 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 DPH3P1Q9H4G8 78 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 JPT2Q9H910 190 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 NOP10Q9NPE3 64 aaKnown RBP4.74□□□□□ -1.65
USP48-208ENST00000479177 TRAPPC1Q9Y5R8 145 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 KIF25-AS1Q9Y6Z4 181 aa4.74□□□□□ -1.65
USP48-208ENST00000479177 TRGV1A0A0A0MS02 117 aa4.73□□□□□ -1.65
USP48-208ENST00000479177 APCSP02743 223 aa4.73□□□□□ -1.65
USP48-208ENST00000479177 EMP1P54849 157 aa4.73□□□□□ -1.65
USP48-208ENST00000479177 LINC00315P59091 139 aa4.73□□□□□ -1.65
USP48-208ENST00000479177 FABP9Q0Z7S8 132 aa4.73□□□□□ -1.65
USP48-208ENST00000479177 LGALS9BQ3B8N2 356 aa4.73□□□□□ -1.65
USP48-208ENST00000479177 MRPL51Q4U2R6 128 aaKnown RBP4.73□□□□□ -1.65
USP48-208ENST00000479177 UFSP1Q6NVU6 142 aa4.73□□□□□ -1.65
USP48-208ENST00000479177 SMIM15Q7Z3B0 74 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms