RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SAPCD1Q5SSQ6 148 aa9.52□□□□□ -0.89
UPF3A-204ENST00000475218 M0R036 132 aa9.51□□□□□ -0.89
UPF3A-204ENST00000475218 Q9UF83 564 aa9.51□□□□□ -0.89
UPF3A-204ENST00000475218 TRBV6-4A0A1B0GX49 114 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 DNLZQ5SXM8 178 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 AKR1C8PQ5T2L2 129 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 COX8CQ7Z4L0 72 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 MAPKAPK5-AS1Q8N8E1 139 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 ZC2HC1AQ96GY0 325 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 A0A087WTM6 91 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 MAP1LC3B2A6NCE7 125 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 UFSP1Q6NVU6 142 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 ZFP82Q8N141 532 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 NHLRC2Q8NBF2 726 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 MAP1LC3BQ9GZQ8 125 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 MSRB1Q9NZV6 116 aa9.5□□□□□ -0.89
UPF3A-204ENST00000475218 B4DEV8 164 aa9.49□□□□□ -0.89
UPF3A-204ENST00000475218 GATCO43716 136 aaKnown RBP9.49□□□□□ -0.89
UPF3A-204ENST00000475218 PARLQ9H300 379 aa9.49□□□□□ -0.89
UPF3A-204ENST00000475218 JPT2Q9H910 190 aa9.49□□□□□ -0.89
UPF3A-204ENST00000475218 FABP5P3A8MUU1 101 aa9.48□□□□□ -0.89
UPF3A-204ENST00000475218 K7EP13 123 aa9.48□□□□□ -0.89
UPF3A-204ENST00000475218 LINC00694P0DN24 101 aa9.48□□□□□ -0.89
UPF3A-204ENST00000475218 EVI2AP22794 236 aa9.48□□□□□ -0.89
UPF3A-204ENST00000475218 FABP9Q0Z7S8 132 aa9.48□□□□□ -0.89
UPF3A-204ENST00000475218 SH2D6Q7Z4S9 175 aa9.48□□□□□ -0.89
UPF3A-204ENST00000475218 NFE4Q86UQ8 179 aa9.48□□□□□ -0.89
UPF3A-204ENST00000475218 SAMD10Q9BYL1 202 aa9.48□□□□□ -0.89
UPF3A-204ENST00000475218 TRAV9-2A0A087WT02 112 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 TRAV1-1A0A0B4J248 108 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 RBFOX3A6NFN3 312 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 CIDEAO60543 219 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 CRYGDP07320 174 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 RHOHQ15669 191 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 Q8N1X5 172 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 YPEL4Q96NS1 127 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 NIT2Q9NQR4 276 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 IGHV3-38A0A0C4DH36 116 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 SH2D1AO60880 128 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 ERVFC1-1P60608 527 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 LINC01556Q5JQF7 62 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 Q8N3U1 123 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 IL36BQ9NZH7 164 aa9.47□□□□□ -0.89
UPF3A-204ENST00000475218 NDUFS6O75380 124 aaKnown RBP9.46□□□□□ -0.9
UPF3A-204ENST00000475218 MGST1P10620 155 aaKnown RBP9.46□□□□□ -0.9
UPF3A-204ENST00000475218 PIK3CD-AS1Q5SR53 167 aa9.46□□□□□ -0.9
UPF3A-204ENST00000475218 DMRTA1Q5VZB9 504 aa9.46□□□□□ -0.9
UPF3A-204ENST00000475218 FAM213BQ8TBF2 198 aa9.46□□□□□ -0.9
UPF3A-204ENST00000475218 PRADC1Q9BSG0 188 aa9.46□□□□□ -0.9
UPF3A-204ENST00000475218 PGPEP1Q9NXJ5 209 aa9.46□□□□□ -0.9
UPF3A-204ENST00000475218 FAT1Q14517 4588 aa9.46□□□□□ -0.9
UPF3A-204ENST00000475218 TRBV6-1A0A0K0K1D8 114 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 LRCOL1A6NCL2 159 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 H3BVH4 76 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 LTAP01374 205 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 ASIPP42127 132 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 PNRC1Q12796 327 aaPredicted RBP9.45□□□□□ -0.9
UPF3A-204ENST00000475218 ZFP2Q6ZN57 461 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 TMEM242Q9NWH2 141 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 ZFP30Q9Y2G7 519 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 GRIFINA4D1Z8 144 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 IBA57-AS1B1ANH7 110 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 ARMS2P0C7Q2 107 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 XGP55808 180 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 KRTAP10-1P60331 282 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 ZNF674Q2M3X9 581 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 LELP1Q5T871 98 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 C14orf178Q8N769 122 aaPredicted RBP9.45□□□□□ -0.9
UPF3A-204ENST00000475218 MBD3L1Q8WWY6 194 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 FMC1Q96HJ9 113 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 SCRT2Q9NQ03 307 aa9.45□□□□□ -0.9
UPF3A-204ENST00000475218 A8MWV9 139 aa9.44□□□□□ -0.9
UPF3A-204ENST00000475218 PAGE4O60829 102 aa9.44□□□□□ -0.9
UPF3A-204ENST00000475218 SRP19P09132 144 aaKnown RBP9.44□□□□□ -0.9
UPF3A-204ENST00000475218 S100A4P26447 101 aaKnown RBP9.44□□□□□ -0.9
UPF3A-204ENST00000475218 S100A2P29034 98 aa9.44□□□□□ -0.9
UPF3A-204ENST00000475218 ATP6V0E2Q8NHE4 81 aa9.44□□□□□ -0.9
UPF3A-204ENST00000475218 GTSF1LQ9H1H1 148 aa9.44□□□□□ -0.9
UPF3A-204ENST00000475218 LINC00587B1AMM8 73 aa9.43□□□□□ -0.9
UPF3A-204ENST00000475218 LINC01559Q495D7 138 aa9.43□□□□□ -0.9
UPF3A-204ENST00000475218 FAM162BQ5T6X4 162 aa9.43□□□□□ -0.9
UPF3A-204ENST00000475218 CST9LP1Q5W188 147 aa9.43□□□□□ -0.9
UPF3A-204ENST00000475218 CDPF1Q6NVV7 123 aa9.43□□□□□ -0.9
UPF3A-204ENST00000475218 C10orf126Q8N4M7 172 aa9.43□□□□□ -0.9
UPF3A-204ENST00000475218 GAGE12JA6NER3 117 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 IGHV3-30P01768 117 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 IGHV3-33P01772 117 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 IGHV3-30-3P0DP02 117 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 IGHV3-30-5P0DP03 117 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 GAGE1Q13065 139 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 GAGE4Q13068 117 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 GAGE5Q13069 117 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 GAGE13Q4V321 117 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 OR10J3Q5JRS4 329 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 ISOC2Q96AB3 205 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 TRAV8-6A0A0B4J262 113 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 A0A1B0GV50 99 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 TAGLN2P37802 199 aaKnown RBP9.42□□□□□ -0.9
UPF3A-204ENST00000475218 AKR1C3P42330 323 aa9.42□□□□□ -0.9
UPF3A-204ENST00000475218 CTDSP1Q9GZU7 261 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms