RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 RHOHQ15669 191 aa10.39□□□□□ -0.75
LIMS1-212ENST00000474038 PRADC1Q9BSG0 188 aa10.39□□□□□ -0.75
LIMS1-212ENST00000474038 RHODO00212 210 aa10.38□□□□□ -0.75
LIMS1-212ENST00000474038 P01737 135 aa10.38□□□□□ -0.75
LIMS1-212ENST00000474038 CRYGDP07320 174 aa10.38□□□□□ -0.75
LIMS1-212ENST00000474038 CEBPGP53567 150 aa10.38□□□□□ -0.75
LIMS1-212ENST00000474038 RPS20P60866 119 aaKnown RBP10.38□□□□□ -0.75
LIMS1-212ENST00000474038 NUDT10Q8NFP7 164 aa10.38□□□□□ -0.75
LIMS1-212ENST00000474038 NUDT11Q96G61 164 aa10.38□□□□□ -0.75
LIMS1-212ENST00000474038 KIAA1109Q2LD37 5005 aa10.38□□□□□ -0.75
LIMS1-212ENST00000474038 A0A087WWL8 130 aa10.37□□□□□ -0.75
LIMS1-212ENST00000474038 MUC21A0A0G2JKD1 596 aa10.37□□□□□ -0.75
LIMS1-212ENST00000474038 MUC21A0A140T8X8 626 aa10.37□□□□□ -0.75
LIMS1-212ENST00000474038 SRP19P09132 144 aaKnown RBP10.37□□□□□ -0.75
LIMS1-212ENST00000474038 IGLC6P0CF74 106 aa10.37□□□□□ -0.75
LIMS1-212ENST00000474038 C1orf134Q5TEV5 83 aa10.37□□□□□ -0.75
LIMS1-212ENST00000474038 FAM74A4Q5TZK3 123 aa10.37□□□□□ -0.75
LIMS1-212ENST00000474038 SPANXN1Q5VSR9 72 aa10.36□□□□□ -0.75
LIMS1-212ENST00000474038 SH2D6Q7Z4S9 175 aa10.36□□□□□ -0.75
LIMS1-212ENST00000474038 C14orf178Q8N769 122 aaPredicted RBP10.36□□□□□ -0.75
LIMS1-212ENST00000474038 SMIM7Q9BQ49 75 aa10.36□□□□□ -0.75
LIMS1-212ENST00000474038 RNASE7Q9H1E1 156 aaKnown RBP10.36□□□□□ -0.75
LIMS1-212ENST00000474038 Q9UF83 564 aa10.36□□□□□ -0.75
LIMS1-212ENST00000474038 XKRY2A2RUG3 117 aa10.35□□□□□ -0.75
LIMS1-212ENST00000474038 SSTP61278 116 aa10.35□□□□□ -0.75
LIMS1-212ENST00000474038 SOHLH1Q5JUK2 328 aa10.35□□□□□ -0.75
LIMS1-212ENST00000474038 FER1L6-AS1Q8NA97 138 aa10.35□□□□□ -0.75
LIMS1-212ENST00000474038 TPPP3Q9BW30 176 aa10.35□□□□□ -0.75
LIMS1-212ENST00000474038 KRTAP1-5Q9BYS1 174 aa10.35□□□□□ -0.75
LIMS1-212ENST00000474038 SIVA1O15304 175 aa10.34□□□□□ -0.75
LIMS1-212ENST00000474038 TIRAPP58753 221 aa10.34□□□□□ -0.75
LIMS1-212ENST00000474038 RPP21Q9H633 154 aaKnown RBP10.34□□□□□ -0.75
LIMS1-212ENST00000474038 LY96Q9Y6Y9 160 aa10.34□□□□□ -0.75
LIMS1-212ENST00000474038 GAGE12JA6NER3 117 aa10.33□□□□□ -0.76
LIMS1-212ENST00000474038 ZNF727A8MUV8 499 aa10.33□□□□□ -0.76
LIMS1-212ENST00000474038 C9JQL5 133 aa10.33□□□□□ -0.76
LIMS1-212ENST00000474038 LINC00694P0DN24 101 aa10.33□□□□□ -0.76
LIMS1-212ENST00000474038 SRSF3P84103 164 aaKnown RBP10.33□□□□□ -0.76
LIMS1-212ENST00000474038 GAGE1Q13065 139 aa10.33□□□□□ -0.76
LIMS1-212ENST00000474038 GAGE4Q13068 117 aa10.33□□□□□ -0.76
LIMS1-212ENST00000474038 GAGE5Q13069 117 aa10.33□□□□□ -0.76
LIMS1-212ENST00000474038 GAGE13Q4V321 117 aa10.33□□□□□ -0.76
LIMS1-212ENST00000474038 A0A1W2PPQ1 181 aa10.32□□□□□ -0.76
LIMS1-212ENST00000474038 F2Z2F3 143 aa10.32□□□□□ -0.76
LIMS1-212ENST00000474038 TTC32Q5I0X7 151 aa10.32□□□□□ -0.76
LIMS1-212ENST00000474038 LYZL1Q6UWQ5 148 aa10.32□□□□□ -0.76
LIMS1-212ENST00000474038 FAM231DQ6ZW35 169 aa10.32□□□□□ -0.76
LIMS1-212ENST00000474038 LINC01551Q86U37 167 aa10.32□□□□□ -0.76
LIMS1-212ENST00000474038 WFDC10BQ8IUB3 73 aa10.32□□□□□ -0.76
LIMS1-212ENST00000474038 ATP6V0E2Q8NHE4 81 aa10.32□□□□□ -0.76
LIMS1-212ENST00000474038 MSRB1Q9NZV6 116 aa10.32□□□□□ -0.76
LIMS1-212ENST00000474038 KIF25-AS1Q9Y6Z4 181 aa10.32□□□□□ -0.76
LIMS1-212ENST00000474038 GATCO43716 136 aaKnown RBP10.31□□□□□ -0.76
LIMS1-212ENST00000474038 RAB4BP61018 213 aa10.31□□□□□ -0.76
LIMS1-212ENST00000474038 CACNG7P62955 275 aa10.31□□□□□ -0.76
LIMS1-212ENST00000474038 TNP2Q05952 138 aa10.31□□□□□ -0.76
LIMS1-212ENST00000474038 PEA15Q15121 130 aa10.31□□□□□ -0.76
LIMS1-212ENST00000474038 C6orf223Q8N319 242 aa10.31□□□□□ -0.76
LIMS1-212ENST00000474038 AP1S3Q96PC3 154 aa10.31□□□□□ -0.76
LIMS1-212ENST00000474038 GTSF1LQ9H1H1 148 aa10.31□□□□□ -0.76
LIMS1-212ENST00000474038 CTRLP40313 264 aa10.3□□□□□ -0.76
LIMS1-212ENST00000474038 LINC00315P59091 139 aa10.3□□□□□ -0.76
LIMS1-212ENST00000474038 ERVFC1-1P60608 527 aa10.3□□□□□ -0.76
LIMS1-212ENST00000474038 ZNF56Q15929 161 aa10.3□□□□□ -0.76
LIMS1-212ENST00000474038 SMDT1Q9H4I9 107 aa10.3□□□□□ -0.76
LIMS1-212ENST00000474038 TRBV10-1A0A0K0K1A3 114 aa10.29□□□□□ -0.76
LIMS1-212ENST00000474038 SMIM17P0DL12 118 aa10.29□□□□□ -0.76
LIMS1-212ENST00000474038 FAM74A3Q4VXF1 159 aa10.29□□□□□ -0.76
LIMS1-212ENST00000474038 WDR73Q6P4I2 378 aa10.29□□□□□ -0.76
LIMS1-212ENST00000474038 GTSF1Q8WW33 167 aa10.29□□□□□ -0.76
LIMS1-212ENST00000474038 DNAH10OSP0CZ25 163 aa10.28□□□□□ -0.76
LIMS1-212ENST00000474038 NTF3P20783 257 aa10.28□□□□□ -0.76
LIMS1-212ENST00000474038 TMEM241Q24JQ0 296 aa10.28□□□□□ -0.76
LIMS1-212ENST00000474038 LELP1Q5T871 98 aa10.28□□□□□ -0.76
LIMS1-212ENST00000474038 CNFNQ9BYD5 112 aa10.28□□□□□ -0.76
LIMS1-212ENST00000474038 KRTAP17-1Q9BYP8 105 aa10.28□□□□□ -0.76
LIMS1-212ENST00000474038 A8MWL6 223 aa10.27□□□□□ -0.77
LIMS1-212ENST00000474038 F5H697 171 aa10.27□□□□□ -0.77
LIMS1-212ENST00000474038 RAB14P61106 215 aa10.27□□□□□ -0.77
LIMS1-212ENST00000474038 RPL36AP83881 106 aaKnown RBP10.27□□□□□ -0.77
LIMS1-212ENST00000474038 CT83Q5H943 113 aa10.27□□□□□ -0.77
LIMS1-212ENST00000474038 OR10J3Q5JRS4 329 aa10.27□□□□□ -0.77
LIMS1-212ENST00000474038 OR10G8Q8NGN5 311 aa10.27□□□□□ -0.77
LIMS1-212ENST00000474038 RPL36ALQ969Q0 106 aaKnown RBP10.27□□□□□ -0.77
LIMS1-212ENST00000474038 OSTCQ9NRP0 149 aa10.27□□□□□ -0.77
LIMS1-212ENST00000474038 TRBV7-3A0A075B6L6 115 aa10.26□□□□□ -0.77
LIMS1-212ENST00000474038 TRAV8-6A0A0B4J262 113 aa10.26□□□□□ -0.77
LIMS1-212ENST00000474038 TRGC1P0CF51 173 aa10.26□□□□□ -0.77
LIMS1-212ENST00000474038 EVI2AP22794 236 aa10.26□□□□□ -0.77
LIMS1-212ENST00000474038 UBE2D3P61077 147 aa10.26□□□□□ -0.77
LIMS1-212ENST00000474038 RPL23P62829 140 aaKnown RBP10.26□□□□□ -0.77
LIMS1-212ENST00000474038 UBE2D2P62837 147 aa10.26□□□□□ -0.77
LIMS1-212ENST00000474038 NEXN-AS1Q8NBZ9 246 aa10.26□□□□□ -0.77
LIMS1-212ENST00000474038 TRAV9-2A0A087WT02 112 aa10.25□□□□□ -0.77
LIMS1-212ENST00000474038 IGHV3-38A0A0C4DH36 116 aa10.25□□□□□ -0.77
LIMS1-212ENST00000474038 MGPP08493 103 aa10.25□□□□□ -0.77
LIMS1-212ENST00000474038 BTF3P20290 206 aaKnown RBP10.25□□□□□ -0.77
LIMS1-212ENST00000474038 IFITM2Q01629 132 aa10.25□□□□□ -0.77
LIMS1-212ENST00000474038 TWIST1Q15672 202 aa10.25□□□□□ -0.77
LIMS1-212ENST00000474038 ISOC2Q96AB3 205 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms