RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 CRYGDP07320 174 aa12.92□□□□□ -0.34
PTCD3-210ENST00000473829 GZMBP10144 247 aa12.92□□□□□ -0.34
PTCD3-210ENST00000473829 A0A1W2PPQ1 181 aa12.91□□□□□ -0.34
PTCD3-210ENST00000473829 RHODO00212 210 aa12.91□□□□□ -0.34
PTCD3-210ENST00000473829 LINC00694P0DN24 101 aa12.91□□□□□ -0.34
PTCD3-210ENST00000473829 TOR2AQ5JU69 321 aa12.91□□□□□ -0.34
PTCD3-210ENST00000473829 SH2D6Q7Z4S9 175 aa12.91□□□□□ -0.34
PTCD3-210ENST00000473829 K7EN84 100 aa12.9□□□□□ -0.34
PTCD3-210ENST00000473829 OR5AL1P0C617 328 aa12.9□□□□□ -0.34
PTCD3-210ENST00000473829 OR2D3Q8NGH3 330 aa12.9□□□□□ -0.34
PTCD3-210ENST00000473829 GAGE12JA6NER3 117 aa12.89□□□□□ -0.35
PTCD3-210ENST00000473829 TMEM250H0YL14 139 aa12.89□□□□□ -0.35
PTCD3-210ENST00000473829 IGLC6P0CF74 106 aa12.89□□□□□ -0.35
PTCD3-210ENST00000473829 TIRAPP58753 221 aa12.89□□□□□ -0.35
PTCD3-210ENST00000473829 TNP2Q05952 138 aa12.89□□□□□ -0.35
PTCD3-210ENST00000473829 GAGE1Q13065 139 aa12.89□□□□□ -0.35
PTCD3-210ENST00000473829 GAGE4Q13068 117 aa12.89□□□□□ -0.35
PTCD3-210ENST00000473829 GAGE5Q13069 117 aa12.89□□□□□ -0.35
PTCD3-210ENST00000473829 GAGE13Q4V321 117 aa12.89□□□□□ -0.35
PTCD3-210ENST00000473829 DAZAP1Q96EP5 407 aaKnown RBP12.89□□□□□ -0.35
PTCD3-210ENST00000473829 DNAH11Q96DT5 4516 aa12.89□□□□□ -0.35
PTCD3-210ENST00000473829 SSTP61278 116 aa12.88□□□□□ -0.35
PTCD3-210ENST00000473829 OCC1Q8TAD7 63 aa12.88□□□□□ -0.35
PTCD3-210ENST00000473829 FAM210AQ96ND0 272 aa12.88□□□□□ -0.35
PTCD3-210ENST00000473829 P01737 135 aa12.87□□□□□ -0.35
PTCD3-210ENST00000473829 LINC00315P59091 139 aa12.87□□□□□ -0.35
PTCD3-210ENST00000473829 SPANXN1Q5VSR9 72 aa12.87□□□□□ -0.35
PTCD3-210ENST00000473829 ATP6V0E2Q8NHE4 81 aa12.87□□□□□ -0.35
PTCD3-210ENST00000473829 DYNC1H1Q14204 4646 aaKnown RBP12.87□□□□□ -0.35
PTCD3-210ENST00000473829 DNAH10OSP0CZ25 163 aa12.86□□□□□ -0.35
PTCD3-210ENST00000473829 RPS20P60866 119 aaKnown RBP12.86□□□□□ -0.35
PTCD3-210ENST00000473829 TEX261Q6UWH6 196 aa12.86□□□□□ -0.35
PTCD3-210ENST00000473829 FER1L6-AS1Q8NA97 138 aa12.86□□□□□ -0.35
PTCD3-210ENST00000473829 NUDT10Q8NFP7 164 aa12.86□□□□□ -0.35
PTCD3-210ENST00000473829 NUDT11Q96G61 164 aa12.86□□□□□ -0.35
PTCD3-210ENST00000473829 TPPP3Q9BW30 176 aa12.86□□□□□ -0.35
PTCD3-210ENST00000473829 EIF5A2Q9GZV4 153 aaKnown RBP12.86□□□□□ -0.35
PTCD3-210ENST00000473829 RNASE7Q9H1E1 156 aaKnown RBP12.86□□□□□ -0.35
PTCD3-210ENST00000473829 BIN3Q9NQY0 253 aa12.86□□□□□ -0.35
PTCD3-210ENST00000473829 LY96Q9Y6Y9 160 aa12.86□□□□□ -0.35
PTCD3-210ENST00000473829 CEBPGP53567 150 aa12.85□□□□□ -0.35
PTCD3-210ENST00000473829 GTSF1LQ9H1H1 148 aa12.85□□□□□ -0.35
PTCD3-210ENST00000473829 TNFRSF18Q9Y5U5 241 aa12.85□□□□□ -0.35
PTCD3-210ENST00000473829 Q6ZRN7 208 aaPredicted RBP12.84□□□□□ -0.35
PTCD3-210ENST00000473829 MSRB1Q9NZV6 116 aa12.84□□□□□ -0.35
PTCD3-210ENST00000473829 SRP19P09132 144 aaKnown RBP12.83□□□□□ -0.36
PTCD3-210ENST00000473829 ZNF56Q15929 161 aa12.83□□□□□ -0.36
PTCD3-210ENST00000473829 LELP1Q5T871 98 aa12.83□□□□□ -0.36
PTCD3-210ENST00000473829 KIF25-AS1Q9Y6Z4 181 aa12.83□□□□□ -0.36
PTCD3-210ENST00000473829 IGHV3-38A0A0C4DH36 116 aa12.82□□□□□ -0.36
PTCD3-210ENST00000473829 OR10J3Q5JRS4 329 aa12.82□□□□□ -0.36
PTCD3-210ENST00000473829 AP1S3Q96PC3 154 aa12.82□□□□□ -0.36
PTCD3-210ENST00000473829 RPP21Q9H633 154 aaKnown RBP12.82□□□□□ -0.36
PTCD3-210ENST00000473829 XKRY2A2RUG3 117 aa12.81□□□□□ -0.36
PTCD3-210ENST00000473829 NDUFS6O75380 124 aaKnown RBP12.81□□□□□ -0.36
PTCD3-210ENST00000473829 BTF3P20290 206 aaKnown RBP12.81□□□□□ -0.36
PTCD3-210ENST00000473829 RAB4BP61018 213 aa12.81□□□□□ -0.36
PTCD3-210ENST00000473829 LYZL1Q6UWQ5 148 aa12.81□□□□□ -0.36
PTCD3-210ENST00000473829 TRAV8-6A0A0B4J262 113 aa12.8□□□□□ -0.36
PTCD3-210ENST00000473829 TRBV10-1A0A0K0K1A3 114 aa12.8□□□□□ -0.36
PTCD3-210ENST00000473829 EVI2AP22794 236 aa12.8□□□□□ -0.36
PTCD3-210ENST00000473829 CTRLP40313 264 aa12.8□□□□□ -0.36
PTCD3-210ENST00000473829 LINC01556Q5JQF7 62 aa12.8□□□□□ -0.36
PTCD3-210ENST00000473829 Q8N3U1 123 aa12.8□□□□□ -0.36
PTCD3-210ENST00000473829 SMIM7Q9BQ49 75 aa12.8□□□□□ -0.36
PTCD3-210ENST00000473829 KIAA1109Q2LD37 5005 aa12.8□□□□□ -0.36
PTCD3-210ENST00000473829 TRAV9-2A0A087WT02 112 aa12.79□□□□□ -0.36
PTCD3-210ENST00000473829 C9JQL5 133 aa12.79□□□□□ -0.36
PTCD3-210ENST00000473829 UBE2D3P61077 147 aa12.79□□□□□ -0.36
PTCD3-210ENST00000473829 UBE2D2P62837 147 aa12.79□□□□□ -0.36
PTCD3-210ENST00000473829 CACNG7P62955 275 aa12.79□□□□□ -0.36
PTCD3-210ENST00000473829 NEXN-AS1Q8NBZ9 246 aa12.79□□□□□ -0.36
PTCD3-210ENST00000473829 F2Z2F3 143 aa12.78□□□□□ -0.36
PTCD3-210ENST00000473829 RPL36AP83881 106 aaKnown RBP12.78□□□□□ -0.36
PTCD3-210ENST00000473829 SRSF3P84103 164 aaKnown RBP12.78□□□□□ -0.36
PTCD3-210ENST00000473829 LINC01551Q86U37 167 aa12.78□□□□□ -0.36
PTCD3-210ENST00000473829 OR10G8Q8NGN5 311 aa12.78□□□□□ -0.36
PTCD3-210ENST00000473829 GTSF1Q8WW33 167 aa12.78□□□□□ -0.36
PTCD3-210ENST00000473829 RPL36ALQ969Q0 106 aaKnown RBP12.78□□□□□ -0.36
PTCD3-210ENST00000473829 TRBV7-3A0A075B6L6 115 aa12.77□□□□□ -0.37
PTCD3-210ENST00000473829 ZNF727A8MUV8 499 aa12.77□□□□□ -0.37
PTCD3-210ENST00000473829 F5H697 171 aa12.77□□□□□ -0.37
PTCD3-210ENST00000473829 K7EP13 123 aa12.77□□□□□ -0.37
PTCD3-210ENST00000473829 IGHV3-30P01768 117 aa12.77□□□□□ -0.37
PTCD3-210ENST00000473829 IGHV3-33P01772 117 aa12.77□□□□□ -0.37
PTCD3-210ENST00000473829 IGHV3-30-3P0DP02 117 aa12.77□□□□□ -0.37
PTCD3-210ENST00000473829 IGHV3-30-5P0DP03 117 aa12.77□□□□□ -0.37
PTCD3-210ENST00000473829 FAM231DQ6ZW35 169 aa12.77□□□□□ -0.37
PTCD3-210ENST00000473829 HERC2O95714 4834 aa12.76□□□□□ -0.37
PTCD3-210ENST00000473829 GATCO43716 136 aaKnown RBP12.76□□□□□ -0.37
PTCD3-210ENST00000473829 MGPP08493 103 aa12.76□□□□□ -0.37
PTCD3-210ENST00000473829 SMIM17P0DL12 118 aa12.76□□□□□ -0.37
PTCD3-210ENST00000473829 NTF3P20783 257 aa12.76□□□□□ -0.37
PTCD3-210ENST00000473829 CNFNQ9BYD5 112 aa12.76□□□□□ -0.37
PTCD3-210ENST00000473829 C10orf126Q8N4M7 172 aa12.75□□□□□ -0.37
PTCD3-210ENST00000473829 A0A087WWC5 75 aa12.74□□□□□ -0.37
PTCD3-210ENST00000473829 ERVFC1-1P60608 527 aa12.74□□□□□ -0.37
PTCD3-210ENST00000473829 SUMO4Q6EEV6 95 aa12.74□□□□□ -0.37
PTCD3-210ENST00000473829 IBA57-AS1B1ANH7 110 aa12.73□□□□□ -0.37
PTCD3-210ENST00000473829 TRGC1P0CF51 173 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms