RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 TMEM191AQ9H0A3 160 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 SELENOKQ9Y6D0 94 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 URGCP-MRPS24S4R325 110 aa4.23□□□□□ -1.73
SYNE1-219ENST00000469439 NF1P21359 2839 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 TRGV2A0A075B6R0 118 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 TMSB15BA0A087X1C1 80 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 IGKV3D-20A0A0C4DH25 116 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 IGHV3-16A0A0C4DH30 117 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 RBMY1BA6NDE4 496 aaKnown RBP4.22□□□□□ -1.73
SYNE1-219ENST00000469439 RBMY1EA6NEQ0 496 aaKnown RBP4.22□□□□□ -1.73
SYNE1-219ENST00000469439 C1orf196B1AJZ1 125 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 PHOX2AO14813 284 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 CRXO43186 299 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-219ENST00000469439 APCSP02743 223 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 RBMY1DP0C7P1 496 aaKnown RBP4.22□□□□□ -1.73
SYNE1-219ENST00000469439 FRMD6-AS1P0C7T7 363 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 IGLC6P0CF74 106 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 RAB5AP20339 215 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 NTF3P20783 257 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 ZNF80P51504 273 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-219ENST00000469439 FXYD7P58549 80 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 SMAGPQ0VAQ4 97 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 ELOBQ15370 118 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 LINC00322Q6ZN03 302 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-219ENST00000469439 ZFP2Q6ZN57 461 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 SH2D6Q7Z4S9 175 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 MRAPQ8TCY5 172 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 RASL10AQ92737 203 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 MRAP2Q96G30 205 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 C9orf85Q96MD7 179 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 C18orf15Q96N68 181 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 OVOL2Q9BRP0 275 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 DPH3P1Q9H4G8 78 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 SCRT2Q9NQ03 307 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 TRAPPC1Q9Y5R8 145 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 SORL1Q92673 2214 aa4.22□□□□□ -1.73
SYNE1-219ENST00000469439 GRIFINA4D1Z8 144 aa4.21□□□□□ -1.74
SYNE1-219ENST00000469439 H3BVH4 76 aa4.21□□□□□ -1.74
SYNE1-219ENST00000469439 K7EMI3 77 aa4.21□□□□□ -1.74
SYNE1-219ENST00000469439 M0R381 172 aa4.21□□□□□ -1.74
SYNE1-219ENST00000469439 AZU1P20160 251 aa4.21□□□□□ -1.74
SYNE1-219ENST00000469439 RPS10P46783 165 aaKnown RBP4.21□□□□□ -1.74
SYNE1-219ENST00000469439 TMEM97Q5BJF2 176 aa4.21□□□□□ -1.74
SYNE1-219ENST00000469439 TMEM88Q6PEY1 159 aa4.21□□□□□ -1.74
SYNE1-219ENST00000469439 C1orf158Q8N1D5 194 aa4.21□□□□□ -1.74
SYNE1-219ENST00000469439 CSNK1G2-AS1Q8NCQ2 148 aa4.21□□□□□ -1.74
SYNE1-219ENST00000469439 OR4C5Q8NGB2 326 aa4.21□□□□□ -1.74
SYNE1-219ENST00000469439 RNASE8Q8TDE3 154 aaKnown RBP4.21□□□□□ -1.74
SYNE1-219ENST00000469439 C11orf68Q9H3H3 251 aaKnown RBP4.21□□□□□ -1.74
SYNE1-219ENST00000469439 COL6A5A8TX70 2615 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 TRGV1A0A0A0MS02 117 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 TRAV4A0A0B4J268 109 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 TRBV10-1A0A0K0K1A3 114 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 GNRH2O43555 120 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 NXPH4O95158 308 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 S100A6P06703 90 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 CKS2P33552 79 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 CAMPP49913 170 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 DEFB1P60022 68 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 DAD1P61803 113 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 FABP9Q0Z7S8 132 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 DEFB135Q30KP9 77 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 MRPL54Q6P161 138 aaKnown RBP4.2□□□□□ -1.74
SYNE1-219ENST00000469439 CBLN2Q8IUK8 224 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 ORMDL3Q8N138 153 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 GATD1Q8NB37 220 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 GTSF1Q8WW33 167 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 DNAJC30Q96LL9 226 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 B9D2Q9BPU9 175 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 PRADC1Q9BSG0 188 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 GSN-AS1Q9NRJ2 163 aa4.2□□□□□ -1.74
SYNE1-219ENST00000469439 TRGV4A0A0C4DH28 118 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 A0A1B0GXF2 115 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 SPINK4O60575 86 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 ATP5G1P05496 136 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 RNASE3P12724 160 aaKnown RBP4.19□□□□□ -1.74
SYNE1-219ENST00000469439 AKR1D1P51857 326 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 TIRAPP58753 221 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 PKIAP61925 76 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 OR10J3Q5JRS4 329 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 PRR9Q5T870 116 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 FAM104BQ5XKR9 115 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 TMEM18Q96B42 140 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 C20orf78Q9BR46 151 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 WFDC10AQ9H1F0 79 aa4.19□□□□□ -1.74
SYNE1-219ENST00000469439 NOP10Q9NPE3 64 aaKnown RBP4.19□□□□□ -1.74
SYNE1-219ENST00000469439 NXT2Q9NPJ8 142 aaKnown RBP4.19□□□□□ -1.74
SYNE1-219ENST00000469439 NOTCH3Q9UM47 2321 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 ANK3Q12955 4377 aaKnown RBP4.18□□□□□ -1.74
SYNE1-219ENST00000469439 TRBV6-4A0A1B0GX49 114 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 COLCA2A8K830 154 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 GIG44P09565 113 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-219ENST00000469439 GZMBP10144 247 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 RAB4AP20338 218 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 PMCHP20382 165 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 RPL36AP83881 106 aaKnown RBP4.18□□□□□ -1.74
SYNE1-219ENST00000469439 ZNF56Q15929 161 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 ATRAIDQ6UW56 229 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 TMEM136Q6ZRR5 245 aa4.18□□□□□ -1.74
SYNE1-219ENST00000469439 C11orf72Q8NBR9 251 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms