RNA–Protein interactions for RNA: ENST00000463066.1

HLA-DPA1-245, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 580 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-245ENST00000463066 TRBV6-4A0A1B0GX49 114 aa11.47□□□□□ -0.57
HLA-DPA1-245ENST00000463066 SRIP30626 198 aa11.47□□□□□ -0.57
HLA-DPA1-245ENST00000463066 RAB14P61106 215 aa11.47□□□□□ -0.57
HLA-DPA1-245ENST00000463066 LYPD5Q6UWN5 251 aa11.47□□□□□ -0.57
HLA-DPA1-245ENST00000463066 LYZL1Q6UWQ5 148 aa11.47□□□□□ -0.57
HLA-DPA1-245ENST00000463066 ZFP2Q6ZN57 461 aa11.47□□□□□ -0.57
HLA-DPA1-245ENST00000463066 LY96Q9Y6Y9 160 aa11.47□□□□□ -0.57
HLA-DPA1-245ENST00000463066 GATCO43716 136 aaKnown RBP11.46□□□□□ -0.57
HLA-DPA1-245ENST00000463066 CIDEAO60543 219 aa11.46□□□□□ -0.57
HLA-DPA1-245ENST00000463066 RHOHQ15669 191 aa11.46□□□□□ -0.57
HLA-DPA1-245ENST00000463066 NEGR1Q7Z3B1 354 aa11.46□□□□□ -0.57
HLA-DPA1-245ENST00000463066 MRPS16Q9Y3D3 137 aaKnown RBP11.46□□□□□ -0.57
HLA-DPA1-245ENST00000463066 GAGE12JA6NER3 117 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 RHODO00212 210 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 RPL23P62829 140 aaKnown RBP11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 GAGE1Q13065 139 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 GAGE4Q13068 117 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 GAGE5Q13069 117 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 TMEM241Q24JQ0 296 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 GAGE13Q4V321 117 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 CLLU1Q5K131 121 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 FAM231DQ6ZW35 169 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 GTSF1Q8WW33 167 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 PRADC1Q9BSG0 188 aa11.45□□□□□ -0.58
HLA-DPA1-245ENST00000463066 XKRY2A2RUG3 117 aa11.44□□□□□ -0.58
HLA-DPA1-245ENST00000463066 FAM3BP58499 235 aaPredicted RBP11.44□□□□□ -0.58
HLA-DPA1-245ENST00000463066 ERVFC1-1P60608 527 aa11.44□□□□□ -0.58
HLA-DPA1-245ENST00000463066 Q6ZR54 194 aa11.44□□□□□ -0.58
HLA-DPA1-245ENST00000463066 KIF25-AS1Q9Y6Z4 181 aa11.44□□□□□ -0.58
HLA-DPA1-245ENST00000463066 LINC00315P59091 139 aa11.43□□□□□ -0.58
HLA-DPA1-245ENST00000463066 ADIRFQ15847 76 aa11.43□□□□□ -0.58
HLA-DPA1-245ENST00000463066 FAM74A3Q4VXF1 159 aa11.43□□□□□ -0.58
HLA-DPA1-245ENST00000463066 Q9H8V8 135 aa11.43□□□□□ -0.58
HLA-DPA1-245ENST00000463066 CTRLP40313 264 aa11.42□□□□□ -0.58
HLA-DPA1-245ENST00000463066 SOHLH1Q5JUK2 328 aa11.42□□□□□ -0.58
HLA-DPA1-245ENST00000463066 ISOC2Q96AB3 205 aa11.42□□□□□ -0.58
HLA-DPA1-245ENST00000463066 UPK3BQ9BT76 320 aa11.42□□□□□ -0.58
HLA-DPA1-245ENST00000463066 KRTAP1-5Q9BYS1 174 aa11.42□□□□□ -0.58
HLA-DPA1-245ENST00000463066 NAT8Q9UHE5 227 aa11.42□□□□□ -0.58
HLA-DPA1-245ENST00000463066 NBDYA0A0U1RRE5 68 aa11.41□□□□□ -0.58
HLA-DPA1-245ENST00000463066 A0A1W2PPQ1 181 aa11.41□□□□□ -0.58
HLA-DPA1-245ENST00000463066 LINC00694P0DN24 101 aa11.41□□□□□ -0.58
HLA-DPA1-245ENST00000463066 CACNG7P62955 275 aa11.41□□□□□ -0.58
HLA-DPA1-245ENST00000463066 ZNF56Q15929 161 aa11.41□□□□□ -0.58
HLA-DPA1-245ENST00000463066 PGLYRP4Q96LB8 373 aa11.41□□□□□ -0.58
HLA-DPA1-245ENST00000463066 AP1S3Q96PC3 154 aa11.41□□□□□ -0.58
HLA-DPA1-245ENST00000463066 SMDT1Q9H4I9 107 aa11.41□□□□□ -0.58
HLA-DPA1-245ENST00000463066 OSTCQ9NRP0 149 aa11.41□□□□□ -0.58
HLA-DPA1-245ENST00000463066 F2Z2F3 143 aa11.4□□□□□ -0.58
HLA-DPA1-245ENST00000463066 NTF3P20783 257 aa11.4□□□□□ -0.58
HLA-DPA1-245ENST00000463066 EVI2AP22794 236 aa11.4□□□□□ -0.58
HLA-DPA1-245ENST00000463066 WFDC10BQ8IUB3 73 aa11.4□□□□□ -0.58
HLA-DPA1-245ENST00000463066 V9GYV3 84 aa11.4□□□□□ -0.58
HLA-DPA1-245ENST00000463066 F5H697 171 aa11.39□□□□□ -0.59
HLA-DPA1-245ENST00000463066 MGPP08493 103 aa11.39□□□□□ -0.59
HLA-DPA1-245ENST00000463066 ATP6V0E2Q8NHE4 81 aa11.39□□□□□ -0.59
HLA-DPA1-245ENST00000463066 A8MWL6 223 aa11.38□□□□□ -0.59
HLA-DPA1-245ENST00000463066 FOXA3P55318 350 aaPredicted RBP11.38□□□□□ -0.59
HLA-DPA1-245ENST00000463066 RAB4BP61018 213 aa11.38□□□□□ -0.59
HLA-DPA1-245ENST00000463066 TWIST1Q15672 202 aa11.38□□□□□ -0.59
HLA-DPA1-245ENST00000463066 CT83Q5H943 113 aa11.38□□□□□ -0.59
HLA-DPA1-245ENST00000463066 OR10G8Q8NGN5 311 aa11.38□□□□□ -0.59
HLA-DPA1-245ENST00000463066 CNFNQ9BYD5 112 aa11.38□□□□□ -0.59
HLA-DPA1-245ENST00000463066 DNAH2Q9P225 4427 aa11.38□□□□□ -0.59
HLA-DPA1-245ENST00000463066 RTL8CO15255 209 aa11.37□□□□□ -0.59
HLA-DPA1-245ENST00000463066 SMIM17P0DL12 118 aa11.37□□□□□ -0.59
HLA-DPA1-245ENST00000463066 WDR73Q6P4I2 378 aa11.37□□□□□ -0.59
HLA-DPA1-245ENST00000463066 SH2D6Q7Z4S9 175 aa11.37□□□□□ -0.59
HLA-DPA1-245ENST00000463066 TSKUQ8WUA8 353 aa11.37□□□□□ -0.59
HLA-DPA1-245ENST00000463066 EPPK1P58107 5090 aaKnown RBP11.36□□□□□ -0.59
HLA-DPA1-245ENST00000463066 SIVA1O15304 175 aa11.36□□□□□ -0.59
HLA-DPA1-245ENST00000463066 TIRAPP58753 221 aa11.36□□□□□ -0.59
HLA-DPA1-245ENST00000463066 SUMO4Q6EEV6 95 aa11.36□□□□□ -0.59
HLA-DPA1-245ENST00000463066 C15orf54Q8N8G6 183 aa11.36□□□□□ -0.59
HLA-DPA1-245ENST00000463066 NEXN-AS1Q8NBZ9 246 aa11.36□□□□□ -0.59
HLA-DPA1-245ENST00000463066 DNAH17Q9UFH2 4485 aa11.35□□□□□ -0.59
HLA-DPA1-245ENST00000463066 HIGD1CA8MV81 97 aa11.35□□□□□ -0.59
HLA-DPA1-245ENST00000463066 GTSF1LQ9H1H1 148 aa11.35□□□□□ -0.59
HLA-DPA1-245ENST00000463066 TRBV10-1A0A0K0K1A3 114 aa11.34□□□□□ -0.59
HLA-DPA1-245ENST00000463066 TRGC1P0CF51 173 aa11.34□□□□□ -0.59
HLA-DPA1-245ENST00000463066 UBE2D3P61077 147 aa11.34□□□□□ -0.59
HLA-DPA1-245ENST00000463066 UBE2D2P62837 147 aa11.34□□□□□ -0.59
HLA-DPA1-245ENST00000463066 DPH3P1Q9H4G8 78 aa11.34□□□□□ -0.59
HLA-DPA1-245ENST00000463066 IGHV3-38A0A0C4DH36 116 aa11.33□□□□□ -0.6
HLA-DPA1-245ENST00000463066 M0QY20 66 aa11.33□□□□□ -0.6
HLA-DPA1-245ENST00000463066 RPL36AP83881 106 aaKnown RBP11.33□□□□□ -0.6
HLA-DPA1-245ENST00000463066 OR10J3Q5JRS4 329 aa11.33□□□□□ -0.6
HLA-DPA1-245ENST00000463066 Q8N3U1 123 aa11.33□□□□□ -0.6
HLA-DPA1-245ENST00000463066 RPL36ALQ969Q0 106 aaKnown RBP11.33□□□□□ -0.6
HLA-DPA1-245ENST00000463066 TRAV26-2A0A0B4J265 109 aa11.32□□□□□ -0.6
HLA-DPA1-245ENST00000463066 ADCYAP1P18509 176 aa11.32□□□□□ -0.6
HLA-DPA1-245ENST00000463066 LELP1Q5T871 98 aa11.32□□□□□ -0.6
HLA-DPA1-245ENST00000463066 C1orf134Q5TEV5 83 aa11.32□□□□□ -0.6
HLA-DPA1-245ENST00000463066 COMMD7Q86VX2 200 aa11.32□□□□□ -0.6
HLA-DPA1-245ENST00000463066 NUP35Q8NFH5 326 aa11.32□□□□□ -0.6
HLA-DPA1-245ENST00000463066 GFRA4Q9GZZ7 299 aa11.32□□□□□ -0.6
HLA-DPA1-245ENST00000463066 TNFRSF18Q9Y5U5 241 aa11.32□□□□□ -0.6
HLA-DPA1-245ENST00000463066 TRBV7-3A0A075B6L6 115 aa11.31□□□□□ -0.6
HLA-DPA1-245ENST00000463066 A0A1B0GUT8 65 aa11.3□□□□□ -0.6
HLA-DPA1-245ENST00000463066 FAM231BA6NCW3 169 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 114.3 ms