RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 DMRTA1Q5VZB9 504 aa9.37□□□□□ -0.91
USP4-206ENST00000461553 UFSP1Q6NVU6 142 aa9.37□□□□□ -0.91
USP4-206ENST00000461553 Q6ZSN1 163 aa9.37□□□□□ -0.91
USP4-206ENST00000461553 ZFP82Q8N141 532 aa9.37□□□□□ -0.91
USP4-206ENST00000461553 SAMD10Q9BYL1 202 aa9.37□□□□□ -0.91
USP4-206ENST00000461553 JPT2Q9H910 190 aa9.37□□□□□ -0.91
USP4-206ENST00000461553 FAT1Q14517 4588 aa9.37□□□□□ -0.91
USP4-206ENST00000461553 S100A9P06702 114 aaKnown RBP9.36□□□□□ -0.91
USP4-206ENST00000461553 C14orf178Q8N769 122 aaPredicted RBP9.36□□□□□ -0.91
USP4-206ENST00000461553 DNAH8Q96JB1 4490 aa9.35□□□□□ -0.91
USP4-206ENST00000461553 A0A087WWC5 75 aa9.35□□□□□ -0.91
USP4-206ENST00000461553 A0A087WWL8 130 aa9.35□□□□□ -0.91
USP4-206ENST00000461553 IGLV5-52A0A0A0MRZ9 124 aa9.35□□□□□ -0.91
USP4-206ENST00000461553 SCO2A0A1W2PP80 73 aa9.35□□□□□ -0.91
USP4-206ENST00000461553 NTN5Q8WTR8 489 aaPredicted RBP9.35□□□□□ -0.91
USP4-206ENST00000461553 MBD3L1Q8WWY6 194 aa9.35□□□□□ -0.91
USP4-206ENST00000461553 SFRP2Q96HF1 295 aa9.35□□□□□ -0.91
USP4-206ENST00000461553 H2AFB1P0C5Y9 115 aa9.34□□□□□ -0.91
USP4-206ENST00000461553 GCSHP23434 173 aa9.34□□□□□ -0.91
USP4-206ENST00000461553 TOR2AQ5JU69 321 aa9.34□□□□□ -0.91
USP4-206ENST00000461553 TM2D2Q9BX73 214 aa9.34□□□□□ -0.91
USP4-206ENST00000461553 URGCP-MRPS24S4R325 110 aa9.34□□□□□ -0.91
USP4-206ENST00000461553 VPS13BQ7Z7G8 4022 aa9.34□□□□□ -0.92
USP4-206ENST00000461553 LRCOL1A6NCL2 159 aa9.33□□□□□ -0.92
USP4-206ENST00000461553 EPM2AB3EWF7 344 aa9.33□□□□□ -0.92
USP4-206ENST00000461553 CXCL1P09341 107 aa9.33□□□□□ -0.92
USP4-206ENST00000461553 KRTAP10-1P60331 282 aa9.33□□□□□ -0.92
USP4-206ENST00000461553 Q8N3U1 123 aa9.33□□□□□ -0.92
USP4-206ENST00000461553 TRAV8-3A0A0A6YYJ7 113 aa9.32□□□□□ -0.92
USP4-206ENST00000461553 TRBV10-1A0A0K0K1A3 114 aa9.32□□□□□ -0.92
USP4-206ENST00000461553 RPL19P84098 196 aaKnown RBP9.32□□□□□ -0.92
USP4-206ENST00000461553 TMUB2Q71RG4 321 aa9.32□□□□□ -0.92
USP4-206ENST00000461553 BAGE2Q86Y30 109 aa9.32□□□□□ -0.92
USP4-206ENST00000461553 Q8N814 137 aa9.32□□□□□ -0.92
USP4-206ENST00000461553 MANBALQ9NQG1 85 aa9.32□□□□□ -0.92
USP4-206ENST00000461553 RPL36AP83881 106 aaKnown RBP9.31□□□□□ -0.92
USP4-206ENST00000461553 ZNF56Q15929 161 aa9.31□□□□□ -0.92
USP4-206ENST00000461553 PRR27Q6MZM9 219 aa9.31□□□□□ -0.92
USP4-206ENST00000461553 RPL36ALQ969Q0 106 aaKnown RBP9.31□□□□□ -0.92
USP4-206ENST00000461553 Q9UF83 564 aa9.31□□□□□ -0.92
USP4-206ENST00000461553 XGP55808 180 aa9.3□□□□□ -0.92
USP4-206ENST00000461553 KCNIP4Q6PIL6 250 aa9.3□□□□□ -0.92
USP4-206ENST00000461553 DAZ4Q86SG3 579 aaKnown RBP9.3□□□□□ -0.92
USP4-206ENST00000461553 OR10AG1Q8NH19 301 aa9.3□□□□□ -0.92
USP4-206ENST00000461553 FRZBQ92765 325 aa9.3□□□□□ -0.92
USP4-206ENST00000461553 RMI2Q96E14 147 aa9.3□□□□□ -0.92
USP4-206ENST00000461553 DAZ3Q9NR90 486 aaKnown RBP9.3□□□□□ -0.92
USP4-206ENST00000461553 GNG13Q9P2W3 67 aa9.3□□□□□ -0.92
USP4-206ENST00000461553 TEX46H3BTG2 121 aa9.29□□□□□ -0.92
USP4-206ENST00000461553 RPL35P42766 123 aaKnown RBP9.29□□□□□ -0.92
USP4-206ENST00000461553 EIF5AL1Q6IS14 154 aaKnown RBP9.29□□□□□ -0.92
USP4-206ENST00000461553 TMEM70Q9BUB7 260 aa9.29□□□□□ -0.92
USP4-206ENST00000461553 MLST8Q9BVC4 326 aa9.29□□□□□ -0.92
USP4-206ENST00000461553 TRBV7-3A0A075B6L6 115 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 A0A087WX48 190 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 SNAI2O43623 268 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 RAB5CP51148 216 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 RAB4BP61018 213 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 UBE2D3P61077 147 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 UBE2D2P62837 147 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 Q5VSD8 79 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 SPANXN1Q5VSR9 72 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 NIT1Q86X76 327 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 CHCHD7Q9BUK0 85 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 COX11Q9Y6N1 276 aa9.28□□□□□ -0.92
USP4-206ENST00000461553 OR5AL1P0C617 328 aa9.27□□□□□ -0.93
USP4-206ENST00000461553 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.27□□□□□ -0.93
USP4-206ENST00000461553 OR10G8Q8NGN5 311 aa9.27□□□□□ -0.93
USP4-206ENST00000461553 C11orf52Q96A22 123 aa9.27□□□□□ -0.93
USP4-206ENST00000461553 AP1S3Q96PC3 154 aa9.27□□□□□ -0.93
USP4-206ENST00000461553 IGKV2D-24A0A075B6R9 120 aa9.26□□□□□ -0.93
USP4-206ENST00000461553 TRAV1-1A0A0B4J248 108 aa9.26□□□□□ -0.93
USP4-206ENST00000461553 IFNA1P01562 189 aa9.26□□□□□ -0.93
USP4-206ENST00000461553 SMIM17P0DL12 118 aa9.26□□□□□ -0.93
USP4-206ENST00000461553 ELOBQ15370 118 aa9.26□□□□□ -0.93
USP4-206ENST00000461553 CENPWQ5EE01 88 aa9.26□□□□□ -0.93
USP4-206ENST00000461553 DERL1Q9BUN8 251 aa9.26□□□□□ -0.93
USP4-206ENST00000461553 KLK12Q9UKR0 248 aa9.26□□□□□ -0.93
USP4-206ENST00000461553 MUC21A0A0G2JKD1 596 aa9.25□□□□□ -0.93
USP4-206ENST00000461553 MUC21A0A140T8X8 626 aa9.25□□□□□ -0.93
USP4-206ENST00000461553 F5H697 171 aa9.25□□□□□ -0.93
USP4-206ENST00000461553 LECT2O14960 151 aa9.25□□□□□ -0.93
USP4-206ENST00000461553 HAMPP81172 84 aa9.25□□□□□ -0.93
USP4-206ENST00000461553 WFDC2Q14508 124 aa9.25□□□□□ -0.93
USP4-206ENST00000461553 NEXN-AS1Q8NBZ9 246 aa9.25□□□□□ -0.93
USP4-206ENST00000461553 SSBP4Q9BWG4 385 aaPredicted RBP9.25□□□□□ -0.93
USP4-206ENST00000461553 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.24□□□□□ -0.93
USP4-206ENST00000461553 RBFOX3A6NFN3 312 aa9.24□□□□□ -0.93
USP4-206ENST00000461553 CRPP02741 224 aa9.24□□□□□ -0.93
USP4-206ENST00000461553 SULT1A2P50226 295 aa9.24□□□□□ -0.93
USP4-206ENST00000461553 CCL20P78556 96 aa9.24□□□□□ -0.93
USP4-206ENST00000461553 TCTE3Q8IZS6 198 aa9.24□□□□□ -0.93
USP4-206ENST00000461553 UBE2WQ96B02 151 aa9.24□□□□□ -0.93
USP4-206ENST00000461553 DAZAP1Q96EP5 407 aaKnown RBP9.24□□□□□ -0.93
USP4-206ENST00000461553 SMIM12Q96EX1 92 aa9.24□□□□□ -0.93
USP4-206ENST00000461553 TPPP3Q9BW30 176 aa9.24□□□□□ -0.93
USP4-206ENST00000461553 DMBT1Q9UGM3 2413 aaPredicted RBP9.24□□□□□ -0.93
USP4-206ENST00000461553 TRBV6-8A0A0A6YYG3 113 aa9.23□□□□□ -0.93
USP4-206ENST00000461553 PDE6DO43924 150 aa9.23□□□□□ -0.93
USP4-206ENST00000461553 GNG4P50150 75 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms