RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ZNF575Q86XF7 245 aa12.75□□□□□ -0.37
USP39-209ENST00000458268 SCRT2Q9NQ03 307 aa12.75□□□□□ -0.37
USP39-209ENST00000458268 TNFRSF18Q9Y5U5 241 aa12.75□□□□□ -0.37
USP39-209ENST00000458268 IGLV2-8P01709 118 aa12.74□□□□□ -0.37
USP39-209ENST00000458268 EVI2AP22794 236 aa12.74□□□□□ -0.37
USP39-209ENST00000458268 TAGLN2P37802 199 aaKnown RBP12.74□□□□□ -0.37
USP39-209ENST00000458268 TRAV9-2A0A087WT02 112 aa12.73□□□□□ -0.37
USP39-209ENST00000458268 TRAV8-6A0A0B4J262 113 aa12.73□□□□□ -0.37
USP39-209ENST00000458268 RBFOX3A6NFN3 312 aa12.73□□□□□ -0.37
USP39-209ENST00000458268 P01737 135 aa12.73□□□□□ -0.37
USP39-209ENST00000458268 MED14OSP0DP75 135 aa12.73□□□□□ -0.37
USP39-209ENST00000458268 TOR2AQ5JU69 321 aa12.73□□□□□ -0.37
USP39-209ENST00000458268 Q9UF83 564 aa12.73□□□□□ -0.37
USP39-209ENST00000458268 TRBV20OR9-2A0A075B6H5 130 aa12.72□□□□□ -0.37
USP39-209ENST00000458268 IGHV3-30P01768 117 aa12.72□□□□□ -0.37
USP39-209ENST00000458268 IGHV3-33P01772 117 aa12.72□□□□□ -0.37
USP39-209ENST00000458268 IGHV3-30-3P0DP02 117 aa12.72□□□□□ -0.37
USP39-209ENST00000458268 IGHV3-30-5P0DP03 117 aa12.72□□□□□ -0.37
USP39-209ENST00000458268 UFSP1Q6NVU6 142 aa12.72□□□□□ -0.37
USP39-209ENST00000458268 DNAH17Q9UFH2 4485 aa12.72□□□□□ -0.37
USP39-209ENST00000458268 HECTD4Q9Y4D8 3996 aa12.71□□□□□ -0.37
USP39-209ENST00000458268 F5H697 171 aa12.71□□□□□ -0.37
USP39-209ENST00000458268 CRYGDP07320 174 aa12.71□□□□□ -0.37
USP39-209ENST00000458268 CXCL1P09341 107 aa12.71□□□□□ -0.37
USP39-209ENST00000458268 EIF5A2Q9GZV4 153 aaKnown RBP12.71□□□□□ -0.37
USP39-209ENST00000458268 GTSF1LQ9H1H1 148 aa12.71□□□□□ -0.37
USP39-209ENST00000458268 IGHV3-38A0A0C4DH36 116 aa12.7□□□□□ -0.38
USP39-209ENST00000458268 SNAI2O43623 268 aa12.7□□□□□ -0.38
USP39-209ENST00000458268 SMIM17P0DL12 118 aa12.7□□□□□ -0.38
USP39-209ENST00000458268 RPS20P60866 119 aaKnown RBP12.7□□□□□ -0.38
USP39-209ENST00000458268 FER1L6-AS1Q8NA97 138 aa12.7□□□□□ -0.38
USP39-209ENST00000458268 MGPP08493 103 aa12.69□□□□□ -0.38
USP39-209ENST00000458268 OR5AL1P0C617 328 aa12.69□□□□□ -0.38
USP39-209ENST00000458268 LELP1Q5T871 98 aa12.69□□□□□ -0.38
USP39-209ENST00000458268 BIN3Q9NQY0 253 aa12.69□□□□□ -0.38
USP39-209ENST00000458268 FAT2Q9NYQ8 4349 aa12.68□□□□□ -0.38
USP39-209ENST00000458268 XKRY2A2RUG3 117 aa12.68□□□□□ -0.38
USP39-209ENST00000458268 C19orf71A6NCJ1 209 aa12.68□□□□□ -0.38
USP39-209ENST00000458268 DNAH10OSP0CZ25 163 aa12.68□□□□□ -0.38
USP39-209ENST00000458268 TIRAPP58753 221 aa12.68□□□□□ -0.38
USP39-209ENST00000458268 SMIM12Q96EX1 92 aa12.68□□□□□ -0.38
USP39-209ENST00000458268 AP1S3Q96PC3 154 aa12.68□□□□□ -0.38
USP39-209ENST00000458268 Q9HAA7 133 aa12.68□□□□□ -0.38
USP39-209ENST00000458268 MSRB1Q9NZV6 116 aa12.68□□□□□ -0.38
USP39-209ENST00000458268 RPL36AP83881 106 aaKnown RBP12.67□□□□□ -0.38
USP39-209ENST00000458268 NUDT10Q8NFP7 164 aa12.67□□□□□ -0.38
USP39-209ENST00000458268 OCC1Q8TAD7 63 aa12.67□□□□□ -0.38
USP39-209ENST00000458268 RPL36ALQ969Q0 106 aaKnown RBP12.67□□□□□ -0.38
USP39-209ENST00000458268 NUDT11Q96G61 164 aa12.67□□□□□ -0.38
USP39-209ENST00000458268 SSBP4Q9BWG4 385 aaPredicted RBP12.67□□□□□ -0.38
USP39-209ENST00000458268 RNASE7Q9H1E1 156 aaKnown RBP12.67□□□□□ -0.38
USP39-209ENST00000458268 C16orf90A8MZG2 172 aa12.66□□□□□ -0.38
USP39-209ENST00000458268 SPATA12Q7Z6I5 190 aa12.66□□□□□ -0.38
USP39-209ENST00000458268 TMEM250H0YL14 139 aa12.65□□□□□ -0.38
USP39-209ENST00000458268 K7EN84 100 aa12.65□□□□□ -0.38
USP39-209ENST00000458268 IGLC6P0CF74 106 aa12.65□□□□□ -0.38
USP39-209ENST00000458268 LINC00694P0DN24 101 aa12.65□□□□□ -0.38
USP39-209ENST00000458268 LYZL1Q6UWQ5 148 aa12.65□□□□□ -0.38
USP39-209ENST00000458268 NFE4Q86UQ8 179 aa12.65□□□□□ -0.38
USP39-209ENST00000458268 Q8N3U1 123 aa12.65□□□□□ -0.38
USP39-209ENST00000458268 C10orf126Q8N4M7 172 aa12.65□□□□□ -0.38
USP39-209ENST00000458268 RAB4BP61018 213 aa12.64□□□□□ -0.39
USP39-209ENST00000458268 LINC01556Q5JQF7 62 aa12.64□□□□□ -0.39
USP39-209ENST00000458268 LYPD6BQ8NI32 183 aa12.64□□□□□ -0.39
USP39-209ENST00000458268 RPP21Q9H633 154 aaKnown RBP12.64□□□□□ -0.39
USP39-209ENST00000458268 PSCAO43653 123 aa12.63□□□□□ -0.39
USP39-209ENST00000458268 ERVFC1-1P60608 527 aa12.63□□□□□ -0.39
USP39-209ENST00000458268 CACNG7P62955 275 aa12.63□□□□□ -0.39
USP39-209ENST00000458268 Q6ZRN7 208 aaPredicted RBP12.63□□□□□ -0.39
USP39-209ENST00000458268 FAM210AQ96ND0 272 aa12.63□□□□□ -0.39
USP39-209ENST00000458268 SMIM7Q9BQ49 75 aa12.63□□□□□ -0.39
USP39-209ENST00000458268 TRBV10-1A0A0K0K1A3 114 aa12.62□□□□□ -0.39
USP39-209ENST00000458268 EREGO14944 169 aa12.62□□□□□ -0.39
USP39-209ENST00000458268 GATCO43716 136 aaKnown RBP12.62□□□□□ -0.39
USP39-209ENST00000458268 BTF3P20290 206 aaKnown RBP12.62□□□□□ -0.39
USP39-209ENST00000458268 NEXN-AS1Q8NBZ9 246 aa12.62□□□□□ -0.39
USP39-209ENST00000458268 TRBV7-3A0A075B6L6 115 aa12.61□□□□□ -0.39
USP39-209ENST00000458268 A0A087WWC5 75 aa12.61□□□□□ -0.39
USP39-209ENST00000458268 FUSP35637 526 aaKnown RBP eCLIP12.61□□□□□ -0.39
USP39-209ENST00000458268 URGCP-MRPS24S4R325 110 aa12.61□□□□□ -0.39
USP39-209ENST00000458268 ZNF727A8MUV8 499 aa12.6□□□□□ -0.39
USP39-209ENST00000458268 F2Z2F3 143 aa12.6□□□□□ -0.39
USP39-209ENST00000458268 K7EP13 123 aa12.6□□□□□ -0.39
USP39-209ENST00000458268 UBE2D3P61077 147 aa12.6□□□□□ -0.39
USP39-209ENST00000458268 UBE2D2P62837 147 aa12.6□□□□□ -0.39
USP39-209ENST00000458268 PKD1P98161 4303 aa12.6□□□□□ -0.39
USP39-209ENST00000458268 SRP19P09132 144 aaKnown RBP12.59□□□□□ -0.39
USP39-209ENST00000458268 TRGC1P0CF51 173 aa12.59□□□□□ -0.39
USP39-209ENST00000458268 NTF3P20783 257 aa12.59□□□□□ -0.39
USP39-209ENST00000458268 KRTAP10-2P60368 255 aa12.59□□□□□ -0.39
USP39-209ENST00000458268 TWIST1Q15672 202 aa12.59□□□□□ -0.39
USP39-209ENST00000458268 DAZ4Q86SG3 579 aaKnown RBP12.59□□□□□ -0.39
USP39-209ENST00000458268 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.59□□□□□ -0.39
USP39-209ENST00000458268 DAZ3Q9NR90 486 aaKnown RBP12.59□□□□□ -0.39
USP39-209ENST00000458268 IBA57-AS1B1ANH7 110 aa12.58□□□□□ -0.4
USP39-209ENST00000458268 KCNIP4Q6PIL6 250 aa12.58□□□□□ -0.4
USP39-209ENST00000458268 TEX261Q6UWH6 196 aa12.58□□□□□ -0.4
USP39-209ENST00000458268 KIF25-AS1Q9Y6Z4 181 aa12.58□□□□□ -0.4
USP39-209ENST00000458268 SUMO4Q6EEV6 95 aa12.57□□□□□ -0.4
USP39-209ENST00000458268 A0A087WX48 190 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms