RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, human

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-208	ENST00000457745	C14orf178	Q8N769	122 aa	Predicted RBP	6.26	□□□□□ -1.41
RIF1-208	ENST00000457745		U3KQK5	164 aa		6.26	□□□□□ -1.41
RIF1-208	ENST00000457745	DNHD1	Q96M86	4753 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	TRGV11	A0A075B6L2	103 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	AMBP	P02760	352 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	RAB5B	P61020	215 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	SNRPE	P62304	92 aa	Known RBP	6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	KPRP	Q5T749	579 aa	Predicted RBP	6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	SPANXN1	Q5VSR9	72 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	UFSP1	Q6NVU6	142 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	WDR73	Q6P4I2	378 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745		Q6ZTI0	123 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	C18orf32	Q8TCD1	76 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	RPL39L	Q96EH5	51 aa	Known RBP	6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	KCNS1	Q96KK3	526 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	C20orf144	Q9BQM9	153 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	TMEM191A	Q9H0A3	160 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	PHLDA3	Q9Y5J5	127 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	TENM3	Q9P273	2699 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	MGAM2	Q2M2H8	2515 aa		6.25	□□□□□ -1.41
RIF1-208	ENST00000457745	IGHV3-73	A0A0B4J1V6	119 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745	C5orf52	A6NGY3	159 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745		D6R8Y8	96 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745	MT-ND6	P03923	174 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745		P0DMU3	169 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745	FAM231A	P0DMU4	169 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745	FAM231C	P0DMU5	169 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745	CACNG7	P62955	275 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745	ZNF415	Q09FC8	603 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745	PDZD11	Q5EBL8	140 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745	NRAC	Q8N912	160 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745	TMEM208	Q9BTX3	173 aa		6.24	□□□□□ -1.41
RIF1-208	ENST00000457745	SERF1A	O75920	110 aa		6.23	□□□□□ -1.41
RIF1-208	ENST00000457745	MGP	P08493	103 aa		6.23	□□□□□ -1.41
RIF1-208	ENST00000457745	COA6	Q5JTJ3	125 aa	Known RBP	6.23	□□□□□ -1.41
RIF1-208	ENST00000457745	HIST3H2BB	Q8N257	126 aa		6.23	□□□□□ -1.41
RIF1-208	ENST00000457745	DEFB104A	Q8WTQ1	72 aa		6.23	□□□□□ -1.41
RIF1-208	ENST00000457745	RASL10A	Q92737	203 aa		6.23	□□□□□ -1.41
RIF1-208	ENST00000457745	BORCS7	Q96B45	105 aa		6.23	□□□□□ -1.41
RIF1-208	ENST00000457745	NOP10	Q9NPE3	64 aa	Known RBP	6.23	□□□□□ -1.41
RIF1-208	ENST00000457745	CELA1	Q9UNI1	258 aa		6.23	□□□□□ -1.41
RIF1-208	ENST00000457745	GOLT1B	Q9Y3E0	138 aa		6.23	□□□□□ -1.41
RIF1-208	ENST00000457745	NBEAL1	Q6ZS30	2694 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	IGHV4-28	A0A0C4DH34	117 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745		A0A1B0GW15	77 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	RS1	O15537	224 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	EMP1	P54849	157 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	NUTF2	P61970	127 aa	Known RBP	6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	ZNF876P	Q49A33	203 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	COX19	Q49B96	90 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	CFAP126	Q5VTH2	177 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	SUMO4	Q6EEV6	95 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	NEGR1	Q7Z3B1	354 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745		Q8NAQ8	132 aa		6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	TMEM263	Q8WUH6	116 aa	Known RBP	6.22	□□□□□ -1.41
RIF1-208	ENST00000457745	NBEAL2	Q6ZNJ1	2754 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	IGLV2-18	A0A075B6J9	118 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745		A0A096LNJ9	63 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	TRGV1	A0A0A0MS02	117 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	KIR2DL5B	A0A0G2JN68	375 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	KIR2DL5B	A0A0G2JPC4	375 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745		A8MZ25	164 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745		M0R2P5	195 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	IGHV3-53	P01767	116 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	HOXA5	P20719	270 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	RIPPLY3	P57055	190 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745		Q0VG73	95 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	PMCHL1	Q16048	86 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	FAM74A4	Q5TZK3	123 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	SBSPON	Q8IVN8	264 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	KIR2DL5A	Q8N109	375 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	KIR2DL5B	Q8NHK3	375 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	RNF183	Q96D59	192 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	ZNF479	Q96JC4	524 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	PRELID3A	Q96N28	172 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	AP1S3	Q96PC3	154 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	OVOL2	Q9BRP0	275 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	KRTAP4-7	Q9BYR0	210 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	DPH3P1	Q9H4G8	78 aa		6.21	□□□□□ -1.42
RIF1-208	ENST00000457745	LOC389332	A0A1B0GUA5	103 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	GAGE12B	A1L429	117 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	UBE2C	O00762	179 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	GAGE7	O76087	117 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	GAGE12F	P0CL80	117 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	GAGE12G	P0CL81	117 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	GAGE12I	P0CL82	117 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	RRN3P1	Q2M238	152 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	LINC00173	Q6ZV60	143 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	LINC00612	Q8N6U2	182 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	OR11H2	Q8NH07	326 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	PTH2	Q96A98	100 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	C1QTNF4	Q9BXJ3	329 aa		6.2	□□□□□ -1.42
RIF1-208	ENST00000457745	LOC100131303	A0A0U1RQF7	123 aa		6.19	□□□□□ -1.42
RIF1-208	ENST00000457745		M0QY20	66 aa		6.19	□□□□□ -1.42
RIF1-208	ENST00000457745	TNFRSF6B	O95407	300 aa		6.19	□□□□□ -1.42
RIF1-208	ENST00000457745	S100A8	P05109	93 aa		6.19	□□□□□ -1.42
RIF1-208	ENST00000457745	CKS2	P33552	79 aa		6.19	□□□□□ -1.42
RIF1-208	ENST00000457745	IFI27	P40305	119 aa	Predicted RBP	6.19	□□□□□ -1.42
RIF1-208	ENST00000457745	APOC4	P55056	127 aa		6.19	□□□□□ -1.42
RIF1-208	ENST00000457745	DAZ2	Q13117	558 aa	Known RBP	6.19	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms