RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 TMSB15BA0A087X1C1 80 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 GAGE12JA6NER3 117 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 RAB5CP51148 216 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 GAGE1Q13065 139 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 GAGE4Q13068 117 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 GAGE5Q13069 117 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 LAGE3Q14657 143 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 GAGE13Q4V321 117 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 MAPKAPK5-AS1Q8N8E1 139 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 C11orf52Q96A22 123 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 MANBALQ9NQG1 85 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 Q9UF83 564 aa8.08□□□□□ -1.12
USP40-210ENST00000454354 hCG_2014768A0A024R1R8 64 aa8.07□□□□□ -1.12
USP40-210ENST00000454354 M0R381 172 aa8.07□□□□□ -1.12
USP40-210ENST00000454354 FAM74A4Q5TZK3 123 aa8.07□□□□□ -1.12
USP40-210ENST00000454354 EIF5AL1Q6IS14 154 aaKnown RBP8.07□□□□□ -1.12
USP40-210ENST00000454354 BAGE2Q86Y30 109 aa8.07□□□□□ -1.12
USP40-210ENST00000454354 A0A087WWC5 75 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 A0A087WWL8 130 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 TRBV10-1A0A0K0K1A3 114 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 LRCOL1A6NCL2 159 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 SNAI2O43623 268 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 IGHV3-30P01768 117 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 IGHV3-33P01772 117 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 IGHV3-30-3P0DP02 117 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 IGHV3-30-5P0DP03 117 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 RPL35P42766 123 aaKnown RBP8.06□□□□□ -1.12
USP40-210ENST00000454354 SULT1A2P50226 295 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 CCL20P78556 96 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 RPL19P84098 196 aaKnown RBP8.06□□□□□ -1.12
USP40-210ENST00000454354 Q8N1X5 172 aa8.06□□□□□ -1.12
USP40-210ENST00000454354 SSBP4Q9BWG4 385 aaPredicted RBP8.06□□□□□ -1.12
USP40-210ENST00000454354 C1QBP02746 253 aa8.05□□□□□ -1.12
USP40-210ENST00000454354 OR5AL1P0C617 328 aa8.05□□□□□ -1.12
USP40-210ENST00000454354 FUSP35637 526 aaKnown RBP eCLIP8.05□□□□□ -1.12
USP40-210ENST00000454354 OR10AG1Q8NH19 301 aa8.05□□□□□ -1.12
USP40-210ENST00000454354 GNG13Q9P2W3 67 aa8.05□□□□□ -1.12
USP40-210ENST00000454354 DNAH8Q96JB1 4490 aa8.05□□□□□ -1.12
USP40-210ENST00000454354 VPS13BQ7Z7G8 4022 aa8.04□□□□□ -1.12
USP40-210ENST00000454354 TEX46H3BTG2 121 aa8.04□□□□□ -1.12
USP40-210ENST00000454354 PSCAO43653 123 aa8.04□□□□□ -1.12
USP40-210ENST00000454354 PRR27Q6MZM9 219 aa8.04□□□□□ -1.12
USP40-210ENST00000454354 AKAP14Q86UN6 197 aa8.04□□□□□ -1.12
USP40-210ENST00000454354 SLC51BQ86UW2 128 aa8.04□□□□□ -1.12
USP40-210ENST00000454354 Q8N3U1 123 aa8.04□□□□□ -1.12
USP40-210ENST00000454354 OR10G8Q8NGN5 311 aa8.04□□□□□ -1.12
USP40-210ENST00000454354 DERL1Q9BUN8 251 aa8.04□□□□□ -1.12
USP40-210ENST00000454354 Q9HAA7 133 aa8.04□□□□□ -1.12
USP40-210ENST00000454354 IGLV2-8P01709 118 aa8.03□□□□□ -1.12
USP40-210ENST00000454354 KRTAP10-1P60331 282 aa8.03□□□□□ -1.12
USP40-210ENST00000454354 RAB4BP61018 213 aa8.03□□□□□ -1.12
USP40-210ENST00000454354 UBE2D3P61077 147 aa8.03□□□□□ -1.12
USP40-210ENST00000454354 UBE2D2P62837 147 aa8.03□□□□□ -1.12
USP40-210ENST00000454354 MEF2BQ02080 365 aaPredicted RBP8.03□□□□□ -1.12
USP40-210ENST00000454354 NTN5Q8WTR8 489 aaPredicted RBP8.03□□□□□ -1.12
USP40-210ENST00000454354 SMIM12Q96EX1 92 aa8.03□□□□□ -1.12
USP40-210ENST00000454354 FAT1Q14517 4588 aa8.02□□□□□ -1.13
USP40-210ENST00000454354 TRBV7-3A0A075B6L6 115 aa8.02□□□□□ -1.13
USP40-210ENST00000454354 RPL36AP83881 106 aaKnown RBP8.02□□□□□ -1.13
USP40-210ENST00000454354 CENPWQ5EE01 88 aa8.02□□□□□ -1.13
USP40-210ENST00000454354 TOR2AQ5JU69 321 aa8.02□□□□□ -1.13
USP40-210ENST00000454354 NIT1Q86X76 327 aa8.02□□□□□ -1.13
USP40-210ENST00000454354 Q8N814 137 aa8.02□□□□□ -1.13
USP40-210ENST00000454354 RPL36ALQ969Q0 106 aaKnown RBP8.02□□□□□ -1.13
USP40-210ENST00000454354 CHCHD7Q9BUK0 85 aa8.02□□□□□ -1.13
USP40-210ENST00000454354 TM2D2Q9BX73 214 aa8.02□□□□□ -1.13
USP40-210ENST00000454354 TRAV8-3A0A0A6YYJ7 113 aa8.01□□□□□ -1.13
USP40-210ENST00000454354 PDE6DO43924 150 aa8.01□□□□□ -1.13
USP40-210ENST00000454354 IFNA1P01562 189 aa8.01□□□□□ -1.13
USP40-210ENST00000454354 BCL2P10415 239 aa8.01□□□□□ -1.13
USP40-210ENST00000454354 GCSHP23434 173 aa8.01□□□□□ -1.13
USP40-210ENST00000454354 XGP55808 180 aa8.01□□□□□ -1.13
USP40-210ENST00000454354 SPANXN1Q5VSR9 72 aa8.01□□□□□ -1.13
USP40-210ENST00000454354 DAZ4Q86SG3 579 aaKnown RBP8.01□□□□□ -1.13
USP40-210ENST00000454354 DAZ3Q9NR90 486 aaKnown RBP8.01□□□□□ -1.13
USP40-210ENST00000454354 TRBV20OR9-2A0A075B6H5 130 aa8□□□□□ -1.13
USP40-210ENST00000454354 C19orf71A6NCJ1 209 aa8□□□□□ -1.13
USP40-210ENST00000454354 IGLC6P0CF74 106 aa8□□□□□ -1.13
USP40-210ENST00000454354 ZNF56Q15929 161 aa8□□□□□ -1.13
USP40-210ENST00000454354 NEXN-AS1Q8NBZ9 246 aa8□□□□□ -1.13
USP40-210ENST00000454354 KIF25-AS1Q9Y6Z4 181 aa8□□□□□ -1.13
USP40-210ENST00000454354 IGLV5-52A0A0A0MRZ9 124 aa7.99□□□□□ -1.13
USP40-210ENST00000454354 MUC21A0A0G2JKD1 596 aa7.99□□□□□ -1.13
USP40-210ENST00000454354 MUC21A0A140T8X8 626 aa7.99□□□□□ -1.13
USP40-210ENST00000454354 RAB19A4D1S5 217 aa7.99□□□□□ -1.13
USP40-210ENST00000454354 TAGLN2P37802 199 aaKnown RBP7.99□□□□□ -1.13
USP40-210ENST00000454354 RPS20P60866 119 aaKnown RBP7.99□□□□□ -1.13
USP40-210ENST00000454354 WFDC2Q14508 124 aa7.99□□□□□ -1.13
USP40-210ENST00000454354 C9orf62Q8N4C0 152 aa7.99□□□□□ -1.13
USP40-210ENST00000454354 AP1S3Q96PC3 154 aa7.99□□□□□ -1.13
USP40-210ENST00000454354 VAX2Q9UIW0 290 aa7.99□□□□□ -1.13
USP40-210ENST00000454354 COX11Q9Y6N1 276 aa7.99□□□□□ -1.13
USP40-210ENST00000454354 URGCP-MRPS24S4R325 110 aa7.99□□□□□ -1.13
USP40-210ENST00000454354 SRRM2Q9UQ35 2752 aaKnown RBP7.99□□□□□ -1.13
USP40-210ENST00000454354 A0A1B0GVG6 124 aa7.98□□□□□ -1.13
USP40-210ENST00000454354 GNG4P50150 75 aa7.98□□□□□ -1.13
USP40-210ENST00000454354 FER1L6-AS1Q8NA97 138 aa7.98□□□□□ -1.13
USP40-210ENST00000454354 OR2D3Q8NGH3 330 aa7.98□□□□□ -1.13
USP40-210ENST00000454354 DAZAP1Q96EP5 407 aaKnown RBP7.98□□□□□ -1.13
USP40-210ENST00000454354 MED9Q9NWA0 146 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms