RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 C9orf116Q5BN46 136 aaPredicted RBP0.15□□□□□ -2.39
USP40-209ENST00000452724 MIC13Q5XKP0 118 aa0.15□□□□□ -2.39
USP40-209ENST00000452724 C20orf197Q8N268 126 aa0.15□□□□□ -2.39
USP40-209ENST00000452724 TMEM242Q9NWH2 141 aa0.15□□□□□ -2.39
USP40-209ENST00000452724 COPZ2Q9P299 210 aa0.15□□□□□ -2.39
USP40-209ENST00000452724 V9GYV3 84 aa0.15□□□□□ -2.39
USP40-209ENST00000452724 MAST4O15021 2626 aa0.15□□□□□ -2.39
USP40-209ENST00000452724 HELZP42694 1942 aaKnown RBP0.15□□□□□ -2.39
USP40-209ENST00000452724 RREB1Q92766 1687 aa0.14□□□□□ -2.39
USP40-209ENST00000452724 SOGA1O94964 1423 aa0.14□□□□□ -2.39
USP40-209ENST00000452724 PRG4Q92954 1404 aaPredicted RBP0.14□□□□□ -2.39
USP40-209ENST00000452724 TRBV7-1A0A0A6YYK4 115 aa0.14□□□□□ -2.39
USP40-209ENST00000452724 PIRTP0C851 137 aa0.14□□□□□ -2.39
USP40-209ENST00000452724 RRAS2P62070 204 aaPredicted RBP0.14□□□□□ -2.39
USP40-209ENST00000452724 SLC48A1Q6P1K1 146 aa0.14□□□□□ -2.39
USP40-209ENST00000452724 TPRP12270 2363 aaKnown RBP0.14□□□□□ -2.39
USP40-209ENST00000452724 MYH1P12882 1939 aa0.14□□□□□ -2.39
USP40-209ENST00000452724 SYNJ1O43426 1573 aa0.14□□□□□ -2.39
USP40-209ENST00000452724 KDM6BO15054 1643 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 BCORL1Q5H9F3 1711 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 JMJD1CQ15652 2540 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 A6NIN4 97 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 K7ERU9 68 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 NPFFO15130 113 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 PITX3O75364 302 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 IFNA17P01571 189 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 APODP05090 189 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 GUCA1AP43080 201 aaPredicted RBP0.13□□□□□ -2.39
USP40-209ENST00000452724 SMIM21Q3B7S5 101 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 Q5BKY6 102 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 Q6ZUT4 128 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 ANP32BQ92688 251 aaKnown RBP0.13□□□□□ -2.39
USP40-209ENST00000452724 Q96NJ1 140 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 PSMG3Q9BT73 122 aaPredicted RBP0.13□□□□□ -2.39
USP40-209ENST00000452724 RPRMQ9NS64 109 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 SCP2D1Q9UJQ7 156 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 PAIP2BQ9ULR5 123 aaKnown RBP0.13□□□□□ -2.39
USP40-209ENST00000452724 TMEM2Q9UHN6 1383 aa0.13□□□□□ -2.39
USP40-209ENST00000452724 AFDNP55196 1824 aaKnown RBP0.13□□□□□ -2.39
USP40-209ENST00000452724 TANC1Q9C0D5 1861 aa0.12□□□□□ -2.39
USP40-209ENST00000452724 SPINK1P00995 79 aa0.12□□□□□ -2.39
USP40-209ENST00000452724 PIPP12273 146 aaPredicted RBP0.12□□□□□ -2.39
USP40-209ENST00000452724 SMCO1Q147U7 214 aa0.12□□□□□ -2.39
USP40-209ENST00000452724 RPL7L1Q6DKI1 246 aaKnown RBP0.12□□□□□ -2.39
USP40-209ENST00000452724 TCEAL4Q96EI5 215 aa0.12□□□□□ -2.39
USP40-209ENST00000452724 CASZ1Q86V15 1759 aa0.11□□□□□ -2.39
USP40-209ENST00000452724 ABCA1O95477 2261 aa0.11□□□□□ -2.39
USP40-209ENST00000452724 ANKRD17O75179 2603 aaKnown RBP0.11□□□□□ -2.39
USP40-209ENST00000452724 COPZ1P61923 177 aa0.11□□□□□ -2.39
USP40-209ENST00000452724 RPS25P62851 125 aaKnown RBP0.11□□□□□ -2.39
USP40-209ENST00000452724 COX6A2Q02221 97 aa0.11□□□□□ -2.39
USP40-209ENST00000452724 INSL4Q14641 139 aa0.11□□□□□ -2.39
USP40-209ENST00000452724 TMEM191AQ9H0A3 160 aa0.11□□□□□ -2.39
USP40-209ENST00000452724 RBBP6Q7Z6E9 1792 aaKnown RBP0.11□□□□□ -2.39
USP40-209ENST00000452724 FHAD1B1AJZ9 1412 aa0.11□□□□□ -2.39
USP40-209ENST00000452724 DAPK1P53355 1430 aa0.11□□□□□ -2.39
USP40-209ENST00000452724 TMEM14DPA8MWL7 114 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 M0R129 80 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 NDUFB6O95139 128 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 NMBP08949 121 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 CBLN1P23435 193 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 EDDM3BP56851 147 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 UBE2G1P62253 170 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 ZNF818PQ6ZRF7 136 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 Q6ZRX8 168 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 KCNRGQ8N5I3 272 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 TSTD1Q8NFU3 115 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 SPTSSAQ969W0 71 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 PFDN5Q99471 154 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 ABCA12Q86UK0 2595 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 TTC28Q96AY4 2481 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 CACNA1HO95180 2353 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 FSIP2Q5CZC0 6907 aa0.1□□□□□ -2.39
USP40-209ENST00000452724 IBTKQ9P2D0 1353 aaPredicted RBP0.09□□□□□ -2.39
USP40-209ENST00000452724 IL5P05113 134 aa0.09□□□□□ -2.4
USP40-209ENST00000452724 ACYP2P14621 99 aa0.09□□□□□ -2.4
USP40-209ENST00000452724 UBE2D1P51668 147 aa0.09□□□□□ -2.4
USP40-209ENST00000452724 Q5VV11 94 aa0.09□□□□□ -2.4
USP40-209ENST00000452724 SDF2Q99470 211 aa0.09□□□□□ -2.4
USP40-209ENST00000452724 WFDC6Q9BQY6 131 aa0.09□□□□□ -2.4
USP40-209ENST00000452724 CCDC167Q9P0B6 97 aa0.09□□□□□ -2.4
USP40-209ENST00000452724 ADGRB1O14514 1584 aa0.09□□□□□ -2.4
USP40-209ENST00000452724 ZNF142P52746 1687 aaPredicted RBP0.08□□□□□ -2.4
USP40-209ENST00000452724 LAMC3Q9Y6N6 1575 aa0.08□□□□□ -2.4
USP40-209ENST00000452724 MYO7AQ13402 2215 aa0.08□□□□□ -2.4
USP40-209ENST00000452724 KIAA0100Q14667 2235 aaKnown RBP0.08□□□□□ -2.4
USP40-209ENST00000452724 TRGV1A0A0A0MS02 117 aa0.08□□□□□ -2.4
USP40-209ENST00000452724 C10orf82Q8WW14 230 aa0.08□□□□□ -2.4
USP40-209ENST00000452724 TPT1P8Q9HAU6 139 aa0.08□□□□□ -2.4
USP40-209ENST00000452724 PIEZO1Q92508 2521 aa0.08□□□□□ -2.4
USP40-209ENST00000452724 CLPSL1A2RUU4 121 aa0.07□□□□□ -2.4
USP40-209ENST00000452724 PIN1P1O15428 100 aa0.07□□□□□ -2.4
USP40-209ENST00000452724 SNCGO76070 127 aa0.07□□□□□ -2.4
USP40-209ENST00000452724 CCL8P80075 99 aa0.07□□□□□ -2.4
USP40-209ENST00000452724 DPH3Q96FX2 82 aa0.07□□□□□ -2.4
USP40-209ENST00000452724 PLXNA2O75051 1894 aa0.07□□□□□ -2.4
USP40-209ENST00000452724 UNC13BO14795 1591 aa0.06□□□□□ -2.4
USP40-209ENST00000452724 MED13LQ71F56 2210 aa0.06□□□□□ -2.4
USP40-209ENST00000452724 APOC4-APOC2K7ER74 178 aa0.06□□□□□ -2.4
USP40-209ENST00000452724 GCHFRP30047 84 aa0.06□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms