RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 GTSF1Q8WW33 167 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 CHAC1Q9BUX1 264 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 PCSK5Q92824 1860 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 TRBV6-1A0A0K0K1D8 114 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 TMEM238C9JI98 176 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 SMAD5-AS1Q9Y6J3 95 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 DEFB125Q8N687 156 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 K7EQG2 157 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 STPG4Q8N801 248 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 LINC00587B1AMM8 73 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 TRANK1O15050 2925 aa5.61□□□□□ -1.51
SYNE1-213ENST00000448038 NPC2P61916 151 aa5.61□□□□□ -1.51
SYNE1-213ENST00000448038 PRIMA1Q86XR5 153 aa5.61□□□□□ -1.51
SYNE1-213ENST00000448038 HSD52Q0P140 79 aa5.61□□□□□ -1.51
SYNE1-213ENST00000448038 SUMO4Q6EEV6 95 aa5.61□□□□□ -1.51
SYNE1-213ENST00000448038 ORAOV1Q8WV07 137 aa5.61□□□□□ -1.51
SYNE1-213ENST00000448038 SFTA2Q6UW10 78 aa5.61□□□□□ -1.51
SYNE1-213ENST00000448038 RPL39LQ96EH5 51 aaKnown RBP5.61□□□□□ -1.51
SYNE1-213ENST00000448038 MYMXA0A1B0GTQ4 84 aa5.61□□□□□ -1.51
SYNE1-213ENST00000448038 PRRC2CQ9Y520 2896 aaKnown RBP5.61□□□□□ -1.51
SYNE1-213ENST00000448038 IGLV1-40P01703 118 aa5.61□□□□□ -1.51
SYNE1-213ENST00000448038 ATP5G1P05496 136 aa5.61□□□□□ -1.51
SYNE1-213ENST00000448038 TEX48A0A1B0GUV7 120 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 C20orf144Q9BQM9 153 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 ANGP03950 147 aaKnown RBP5.6□□□□□ -1.51
SYNE1-213ENST00000448038 Q6ZWC4 215 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 DEFB4AO15263 64 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 MDFICQ9P1T7 246 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 C19orf71A6NCJ1 209 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 H3BUT2 72 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 GYPEP15421 78 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 ZNF80P51504 273 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-213ENST00000448038 C18orf65Q6ZTR6 163 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 ESDP10768 282 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 RNASE13Q5GAN3 156 aaKnown RBP5.6□□□□□ -1.51
SYNE1-213ENST00000448038 SHISA2Q6UWI4 295 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 C20orf173Q96LM9 149 aa5.6□□□□□ -1.51
SYNE1-213ENST00000448038 A0A1B0GV90 55 aa5.59□□□□□ -1.51
SYNE1-213ENST00000448038 K7EQD1 137 aa5.59□□□□□ -1.51
SYNE1-213ENST00000448038 MED14OSP0DP75 135 aa5.59□□□□□ -1.51
SYNE1-213ENST00000448038 CTRLP40313 264 aa5.59□□□□□ -1.51
SYNE1-213ENST00000448038 ESM1Q9NQ30 184 aa5.59□□□□□ -1.51
SYNE1-213ENST00000448038 H3BMM0 161 aa5.59□□□□□ -1.51
SYNE1-213ENST00000448038 ZNF625Q96I27 306 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-213ENST00000448038 MRPL35Q9NZE8 188 aaKnown RBP5.59□□□□□ -1.51
SYNE1-213ENST00000448038 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-213ENST00000448038 IGKV2-29A2NJV5 120 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-213ENST00000448038 S100A7L2Q5SY68 101 aa5.59□□□□□ -1.51
SYNE1-213ENST00000448038 CLPSL2Q6UWE3 100 aa5.59□□□□□ -1.51
SYNE1-213ENST00000448038 DNAJC30Q96LL9 226 aa5.59□□□□□ -1.51
SYNE1-213ENST00000448038 K7EMI3 77 aa5.59□□□□□ -1.52
SYNE1-213ENST00000448038 SPCS1Q9Y6A9 102 aa5.59□□□□□ -1.52
SYNE1-213ENST00000448038 DOPEY1Q5JWR5 2465 aa5.59□□□□□ -1.52
SYNE1-213ENST00000448038 ZNF561-AS1K7EIQ3 104 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 LGALS9BQ3B8N2 356 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 LGALS9CQ6DKI2 356 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 ZNF664Q8N3J9 261 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 TMEM263Q8WUH6 116 aaKnown RBP5.58□□□□□ -1.52
SYNE1-213ENST00000448038 F8VRH5 84 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 IGLV2-8P01709 118 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 IGLL1P15814 213 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 MRPL23Q16540 153 aaKnown RBP5.58□□□□□ -1.52
SYNE1-213ENST00000448038 LINC00322Q6ZN03 302 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-213ENST00000448038 K7ERU9 68 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 ATP6V0E2Q8NHE4 81 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 SETD2Q9BYW2 2564 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-213ENST00000448038 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-213ENST00000448038 ODF3Q96PU9 254 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 POLQO75417 2590 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 SLC25A20O43772 301 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 ZNF124Q15973 351 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 Q6ZQT7 251 aa5.58□□□□□ -1.52
SYNE1-213ENST00000448038 FN1P02751 2386 aaKnown RBP5.57□□□□□ -1.52
SYNE1-213ENST00000448038 ICOSQ9Y6W8 199 aa5.57□□□□□ -1.52
SYNE1-213ENST00000448038 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-213ENST00000448038 JPT2Q9H910 190 aa5.57□□□□□ -1.52
SYNE1-213ENST00000448038 ERG28Q9UKR5 140 aa5.57□□□□□ -1.52
SYNE1-213ENST00000448038 HHLA3Q9XRX5 114 aa5.57□□□□□ -1.52
SYNE1-213ENST00000448038 MLST8Q9BVC4 326 aa5.57□□□□□ -1.52
SYNE1-213ENST00000448038 FRMD6-AS1P0C7T7 363 aa5.57□□□□□ -1.52
SYNE1-213ENST00000448038 ZNF747Q9BV97 191 aa5.57□□□□□ -1.52
SYNE1-213ENST00000448038 TRAV8-2A0A0B4J237 113 aa5.57□□□□□ -1.52
SYNE1-213ENST00000448038 DAZ2Q13117 558 aaKnown RBP5.57□□□□□ -1.52
SYNE1-213ENST00000448038 MPV17L2Q567V2 206 aa5.57□□□□□ -1.52
SYNE1-213ENST00000448038 DAZ4Q86SG3 579 aaKnown RBP5.57□□□□□ -1.52
SYNE1-213ENST00000448038 DAZ3Q9NR90 486 aaKnown RBP5.57□□□□□ -1.52
SYNE1-213ENST00000448038 TP53TG3Q9ULZ0 132 aa5.57□□□□□ -1.52
SYNE1-213ENST00000448038 PRSS29PA6NIE9 313 aa5.56□□□□□ -1.52
SYNE1-213ENST00000448038 HERVK_113P63121 156 aa5.56□□□□□ -1.52
SYNE1-213ENST00000448038 MTURNQ8N3F0 131 aa5.56□□□□□ -1.52
SYNE1-213ENST00000448038 DKK2Q9UBU2 259 aa5.56□□□□□ -1.52
SYNE1-213ENST00000448038 TRBV7-3A0A075B6L6 115 aa5.56□□□□□ -1.52
SYNE1-213ENST00000448038 GDF5OSQ5U4N7 250 aa5.56□□□□□ -1.52
SYNE1-213ENST00000448038 RMI2Q96E14 147 aa5.56□□□□□ -1.52
SYNE1-213ENST00000448038 ZNF479Q96JC4 524 aa5.56□□□□□ -1.52
SYNE1-213ENST00000448038 LEPROTO15243 131 aa5.56□□□□□ -1.52
SYNE1-213ENST00000448038 ZFP2Q6ZN57 461 aa5.56□□□□□ -1.52
SYNE1-213ENST00000448038 A0A1B0GWB2 263 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 NDUFA7O95182 113 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 SH2D6Q7Z4S9 175 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 180.7 ms