RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 FGF23Q9GZV9 251 aaPredicted RBP5.66□□□□□ -1.5
VPS53-204ENST00000437048 WT1-ASQ06250 92 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 NSUN5P1Q3KNT7 163 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 RNF144BQ7Z419 303 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 MDS2Q8NDY4 140 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 K7ERJ3 54 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 GP9P14770 177 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 C16orf74Q96GX8 76 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 PCNX3Q9H6A9 2034 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 FHL1Q13642 323 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 CEP192Q8TEP8 1941 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 C2orf70A6NJV1 201 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 PCP2Q8IVA1 136 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 NPBQ8NG41 125 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 SPTBN4Q9H254 2564 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 TRBV7-3A0A075B6L6 115 aa5.65□□□□□ -1.5
VPS53-204ENST00000437048 K7ENP7 123 aa5.65□□□□□ -1.51
VPS53-204ENST00000437048 IGLV1-44P01699 117 aa5.65□□□□□ -1.51
VPS53-204ENST00000437048 RPS28P62857 69 aaKnown RBP5.65□□□□□ -1.51
VPS53-204ENST00000437048 EXPH5Q8NEV8 1989 aa5.65□□□□□ -1.51
VPS53-204ENST00000437048 A0A0G2JRQ6 117 aa5.65□□□□□ -1.51
VPS53-204ENST00000437048 ETDCA0A1B0GVM5 59 aa5.65□□□□□ -1.51
VPS53-204ENST00000437048 CLUHP3Q96NS8 147 aa5.65□□□□□ -1.51
VPS53-204ENST00000437048 PKD1L2Q7Z442 2459 aa5.65□□□□□ -1.51
VPS53-204ENST00000437048 IBA57-AS1B1ANH7 110 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 K7EN84 100 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 RBX1P62877 108 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 ZNF837Q96EG3 531 aaPredicted RBP5.64□□□□□ -1.51
VPS53-204ENST00000437048 SMKR1H3BMG3 65 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 CELA2AP08217 269 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 CELA3BP08861 270 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 CDPF1Q6NVV7 123 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 DIRC1Q969H9 104 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 ZNF625Q96I27 306 aaPredicted RBP5.64□□□□□ -1.51
VPS53-204ENST00000437048 BLCAPP62952 87 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 A0A0U1RRA0 63 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 A0A087WWL8 130 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 NDUFA1O15239 70 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 B3GALT5-AS1P59052 145 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 FXYD2P54710 66 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 COL8A2P25067 703 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 MRGPRG-AS1Q2M3A8 158 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 SAP30O75446 220 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 IGHV3-11P01762 117 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 SAA4P35542 130 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 PYGO1Q9Y3Y4 419 aa5.64□□□□□ -1.51
VPS53-204ENST00000437048 BPY2O14599 106 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 LY6DQ14210 128 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 WFDC2Q14508 124 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 UPK3BQ9BT76 320 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 COX17Q14061 63 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 USP9XQ93008 2570 aaPredicted RBP5.63□□□□□ -1.51
VPS53-204ENST00000437048 FAM27E3Q08E93 113 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 UBE2DNLQ8IWF7 75 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 IGHV3OR16-10A0A075B7F0 116 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 BPESC1Q9GZL8 116 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 IGHV3-66A0A0C4DH42 116 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 TIRAPP58753 221 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 CRYGCP07315 174 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 C19orf71A6NCJ1 209 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 FAM110AQ9BQ89 295 aa5.63□□□□□ -1.51
VPS53-204ENST00000437048 FAM120AOSQ5T036 256 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 FGFBP3Q8TAT2 258 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 BAALCQ8WXS3 180 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 PFN2P35080 140 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 UFSP1Q6NVU6 142 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 TRAV12-2A0A075B6T6 113 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 C1orf195Q5TG92 126 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 LINC00574Q9H8X3 128 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 A0A0U1RQV1 116 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 TEX22C9J3V5 150 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 IGHV3-23P01764 117 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 C20orf203Q8NBC4 194 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 ZNF503Q96F45 646 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 U3KQE9 123 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 OVOL3O00110 214 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 LINC00526Q96FQ7 95 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 POLQO75417 2590 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 KRTAP27-1Q3LI81 207 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 U3KQK5 164 aa5.62□□□□□ -1.51
VPS53-204ENST00000437048 Q6JHZ5 121 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 UNQ6494/PRO21346Q6UXR6 183 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 TMEM61Q8N0U2 210 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 H3BUX3 64 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 ZNF581Q9P0T4 197 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 CLPSP04118 112 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 ZNRF2Q8NHG8 242 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 FAM167A-AS1Q96KT0 104 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 IGKV1-39P01597 117 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 IGKV1D-39P04432 117 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 TRBV10-3A0A0K0K1G6 114 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 NOTCH4Q99466 2003 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 USP17L23D6RBM5 183 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 K7EQD1 137 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 C10orf55Q5SWW7 151 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 AGPAT4-IT1Q9H0P7 198 aa5.61□□□□□ -1.51
VPS53-204ENST00000437048 C17orf58Q2M2W7 97 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 PIEZO2Q9H5I5 2752 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 YPEL4Q96NS1 127 aa5.6□□□□□ -1.51
VPS53-204ENST00000437048 TNRC6BQ9UPQ9 1833 aaKnown RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms