RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 TRAV12-3A0A0B4J271 114 aa2.34□□□□□ -2.03
CCDC88A-206ENST00000430086 PDE6GP18545 87 aa2.34□□□□□ -2.03
CCDC88A-206ENST00000430086 Q6ZRN7 208 aaPredicted RBP2.34□□□□□ -2.03
CCDC88A-206ENST00000430086 MED12LQ86YW9 2145 aa2.34□□□□□ -2.03
CCDC88A-206ENST00000430086 MYOZ3Q8TDC0 251 aa2.34□□□□□ -2.03
CCDC88A-206ENST00000430086 IFI27L1Q96BM0 104 aa2.34□□□□□ -2.03
CCDC88A-206ENST00000430086 ANK1P16157 1881 aa2.34□□□□□ -2.03
CCDC88A-206ENST00000430086 CASZ1Q86V15 1759 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 HEATR1Q9H583 2144 aaKnown RBP2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 TEX14Q8IWB6 1497 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 RAPGEF2Q9Y4G8 1499 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 TRAV13-2A0A0B4J235 113 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 HIGD1CA8MV81 97 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 M0R2N4 97 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 CCKP06307 115 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 SNCAP37840 140 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 CCL8P80075 99 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 SPATA45Q537H7 98 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 CYP2G1PQ6ZSU1 146 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 VAMP8Q9BV40 100 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 MDC1Q14676 2089 aaKnown RBP2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 C10orf71Q711Q0 1435 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 PLXNA4Q9HCM2 1894 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 FYCO1Q9BQS8 1478 aa2.33□□□□□ -2.04
CCDC88A-206ENST00000430086 KDM6BO15054 1643 aa2.32□□□□□ -2.04
CCDC88A-206ENST00000430086 KRTDAPP60985 99 aa2.32□□□□□ -2.04
CCDC88A-206ENST00000430086 ODF3Q96PU9 254 aa2.32□□□□□ -2.04
CCDC88A-206ENST00000430086 CYP4F30PQ9H0H9 118 aa2.32□□□□□ -2.04
CCDC88A-206ENST00000430086 TRPM7Q96QT4 1865 aa2.32□□□□□ -2.04
CCDC88A-206ENST00000430086 NINQ8N4C6 2090 aa2.32□□□□□ -2.04
CCDC88A-206ENST00000430086 ARHGAP5Q13017 1502 aa2.32□□□□□ -2.04
CCDC88A-206ENST00000430086 ALPK2Q86TB3 2170 aa2.32□□□□□ -2.04
CCDC88A-206ENST00000430086 FN1P02751 2386 aaKnown RBP2.31□□□□□ -2.04
CCDC88A-206ENST00000430086 IGKV3-7A0A075B6H7 116 aa2.31□□□□□ -2.04
CCDC88A-206ENST00000430086 TEX49A0A1B0GTD5 131 aa2.31□□□□□ -2.04
CCDC88A-206ENST00000430086 RBAKDNA6NC62 111 aa2.31□□□□□ -2.04
CCDC88A-206ENST00000430086 IGLV3-1P01715 115 aa2.31□□□□□ -2.04
CCDC88A-206ENST00000430086 TFF1P04155 84 aa2.31□□□□□ -2.04
CCDC88A-206ENST00000430086 ZNF818PQ6ZRF7 136 aa2.31□□□□□ -2.04
CCDC88A-206ENST00000430086 PTPRMP28827 1452 aa2.31□□□□□ -2.04
CCDC88A-206ENST00000430086 AKAP12Q02952 1782 aa2.31□□□□□ -2.04
CCDC88A-206ENST00000430086 RBBP6Q7Z6E9 1792 aaKnown RBP2.31□□□□□ -2.04
CCDC88A-206ENST00000430086 PTPRFP10586 1907 aa2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 MCM3APO60318 1980 aa2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 EML5Q05BV3 1969 aa2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 LOC110117498A0A087WWA1 95 aa2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 HCG22E2RYF7 251 aa2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 PPP1R1CQ8WVI7 109 aa2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 C10orf82Q8WW14 230 aa2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 SCP2D1Q9UJQ7 156 aa2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 BAZ1AQ9NRL2 1556 aaPredicted RBP2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 SPHKAPQ2M3C7 1700 aa2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 CEP192Q8TEP8 1941 aa2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 BAZ2BQ9UIF8 2168 aaKnown RBP2.3□□□□□ -2.04
CCDC88A-206ENST00000430086 FREM1Q5H8C1 2179 aa2.29□□□□□ -2.04
CCDC88A-206ENST00000430086 ADGRL2O95490 1459 aa2.29□□□□□ -2.04
CCDC88A-206ENST00000430086 CDK12Q9NYV4 1490 aaPredicted RBP2.29□□□□□ -2.04
CCDC88A-206ENST00000430086 NAP1L6A6NFF2 107 aa2.29□□□□□ -2.04
CCDC88A-206ENST00000430086 SIX6O95475 246 aa2.29□□□□□ -2.04
CCDC88A-206ENST00000430086 GDF5OSQ5U4N7 250 aa2.29□□□□□ -2.04
CCDC88A-206ENST00000430086 ICE1Q9Y2F5 2266 aa2.29□□□□□ -2.04
CCDC88A-206ENST00000430086 GAPVD1Q14C86 1478 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 SCAPERQ9BY12 1400 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 DOCK10Q96BY6 2186 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 TRBV6-7A0A0A0MS04 114 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 GNGT2O14610 69 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 HCRTO43612 131 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 RPL37AP61513 92 aaKnown RBP2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 GNG11P61952 73 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 SPRNQ5BIV9 151 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 C9orf62Q8N4C0 152 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 C15orf53Q8NAA6 179 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 MYOFQ9NZM1 2061 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 STRCP1A6NGW2 1772 aa2.28□□□□□ -2.04
CCDC88A-206ENST00000430086 IL9P15248 144 aa2.27□□□□□ -2.05
CCDC88A-206ENST00000430086 ZNF625Q96I27 306 aaPredicted RBP2.27□□□□□ -2.05
CCDC88A-206ENST00000430086 AMELYQ99218 206 aa2.27□□□□□ -2.05
CCDC88A-206ENST00000430086 UNC13CQ8NB66 2214 aa2.27□□□□□ -2.05
CCDC88A-206ENST00000430086 ADGRB2O60241 1585 aa2.27□□□□□ -2.05
CCDC88A-206ENST00000430086 PPIP5K1Q6PFW1 1433 aa2.26□□□□□ -2.05
CCDC88A-206ENST00000430086 SIP14410 1827 aa2.26□□□□□ -2.05
CCDC88A-206ENST00000430086 LAMB1P07942 1786 aa2.26□□□□□ -2.05
CCDC88A-206ENST00000430086 TRBV7-1A0A0A6YYK4 115 aa2.26□□□□□ -2.05
CCDC88A-206ENST00000430086 MT-ATP8P03928 68 aa2.26□□□□□ -2.05
CCDC88A-206ENST00000430086 DEFB103AP81534 67 aa2.26□□□□□ -2.05
CCDC88A-206ENST00000430086 KRTAP21-2Q3LI59 83 aa2.26□□□□□ -2.05
CCDC88A-206ENST00000430086 LINC00312Q9Y6C7 94 aa2.26□□□□□ -2.05
CCDC88A-206ENST00000430086 PCDH15Q96QU1 1955 aa2.26□□□□□ -2.05
CCDC88A-206ENST00000430086 PLXNA2O75051 1894 aa2.26□□□□□ -2.05
CCDC88A-206ENST00000430086 IGKV3D-7A0A0C4DH55 119 aa2.25□□□□□ -2.05
CCDC88A-206ENST00000430086 IGKV3OR2-268A0A0C4DH90 116 aa2.25□□□□□ -2.05
CCDC88A-206ENST00000430086 UBE2D1P51668 147 aa2.25□□□□□ -2.05
CCDC88A-206ENST00000430086 C10orf128Q5T292 105 aa2.25□□□□□ -2.05
CCDC88A-206ENST00000430086 FAM74A4Q5TZK3 123 aa2.25□□□□□ -2.05
CCDC88A-206ENST00000430086 CYSTM1Q9H1C7 97 aa2.25□□□□□ -2.05
CCDC88A-206ENST00000430086 MAGI1Q96QZ7 1491 aaPredicted RBP2.25□□□□□ -2.05
CCDC88A-206ENST00000430086 ASIPP42127 132 aa2.24□□□□□ -2.05
CCDC88A-206ENST00000430086 SSBP1Q04837 148 aaKnown RBP2.24□□□□□ -2.05
CCDC88A-206ENST00000430086 Q0VG73 95 aa2.24□□□□□ -2.05
CCDC88A-206ENST00000430086 UNQ6190/PRO20217Q6UXQ8 127 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms