RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 KNCNA6PVL3 124 aa9.44□□□□□ -0.9
CDH3-202ENST00000429102 E9PLD3 99 aa9.44□□□□□ -0.9
CDH3-202ENST00000429102 ZFAND2AQ8N6M9 145 aa9.44□□□□□ -0.9
CDH3-202ENST00000429102 C5orf56Q8N8D9 126 aa9.44□□□□□ -0.9
CDH3-202ENST00000429102 ORMDL2Q53FV1 153 aa9.43□□□□□ -0.9
CDH3-202ENST00000429102 PSMG4Q5JS54 123 aa9.43□□□□□ -0.9
CDH3-202ENST00000429102 SPANXB1Q9NS25 103 aaPredicted RBP9.43□□□□□ -0.9
CDH3-202ENST00000429102 FN1P02751 2386 aaKnown RBP9.43□□□□□ -0.9
CDH3-202ENST00000429102 PRRC2AP48634 2157 aaKnown RBP9.43□□□□□ -0.9
CDH3-202ENST00000429102 TM2D2Q9BX73 214 aa9.43□□□□□ -0.9
CDH3-202ENST00000429102 CNFNQ9BYD5 112 aa9.43□□□□□ -0.9
CDH3-202ENST00000429102 TRBV7-1A0A0A6YYK4 115 aa9.43□□□□□ -0.9
CDH3-202ENST00000429102 SPINK13Q1W4C9 94 aa9.42□□□□□ -0.9
CDH3-202ENST00000429102 C11orf71Q6IPW1 123 aa9.42□□□□□ -0.9
CDH3-202ENST00000429102 ZNF48Q96MX3 618 aaPredicted RBP9.42□□□□□ -0.9
CDH3-202ENST00000429102 MUC4Q99102 2169 aa9.42□□□□□ -0.9
CDH3-202ENST00000429102 NF1P21359 2839 aa9.42□□□□□ -0.9
CDH3-202ENST00000429102 HIGD1BQ9P298 99 aa9.42□□□□□ -0.9
CDH3-202ENST00000429102 LMO4P61968 165 aa9.42□□□□□ -0.9
CDH3-202ENST00000429102 C9orf47Q6ZRZ4 202 aa9.42□□□□□ -0.9
CDH3-202ENST00000429102 KIR2DL4Q99706 377 aa9.42□□□□□ -0.9
CDH3-202ENST00000429102 MDFICQ9P1T7 246 aa9.42□□□□□ -0.9
CDH3-202ENST00000429102 NOTCH2Q04721 2471 aa9.41□□□□□ -0.9
CDH3-202ENST00000429102 TRAV26-1A0A087WT03 109 aa9.41□□□□□ -0.9
CDH3-202ENST00000429102 KLRB1Q12918 225 aa9.41□□□□□ -0.9
CDH3-202ENST00000429102 GPHB5Q86YW7 130 aa9.41□□□□□ -0.9
CDH3-202ENST00000429102 ZNF580Q9UK33 172 aa9.41□□□□□ -0.9
CDH3-202ENST00000429102 IGHV4-61A0A0C4DH41 118 aa9.41□□□□□ -0.9
CDH3-202ENST00000429102 SDHAF1A6NFY7 115 aa9.41□□□□□ -0.9
CDH3-202ENST00000429102 CEMP1Q6PRD7 247 aaPredicted RBP9.41□□□□□ -0.9
CDH3-202ENST00000429102 C9orf139Q6ZV77 190 aa9.41□□□□□ -0.9
CDH3-202ENST00000429102 AJUBAQ96IF1 538 aa9.41□□□□□ -0.9
CDH3-202ENST00000429102 ATP6V0BQ99437 205 aa9.41□□□□□ -0.9
CDH3-202ENST00000429102 GEMIN7Q9H840 131 aaKnown RBP9.41□□□□□ -0.9
CDH3-202ENST00000429102 F8W1H4 67 aa9.4□□□□□ -0.9
CDH3-202ENST00000429102 LGALS3P17931 250 aaKnown RBP9.4□□□□□ -0.9
CDH3-202ENST00000429102 EBI3Q14213 229 aa9.4□□□□□ -0.9
CDH3-202ENST00000429102 MOB4Q9Y3A3 225 aa9.4□□□□□ -0.9
CDH3-202ENST00000429102 NIPBLQ6KC79 2804 aaeCLIP9.4□□□□□ -0.9
CDH3-202ENST00000429102 TMEM238LA0A1B0GVL6 79 aa9.4□□□□□ -0.9
CDH3-202ENST00000429102 A6NJY4 79 aa9.4□□□□□ -0.9
CDH3-202ENST00000429102 MT-ATP8P03928 68 aa9.4□□□□□ -0.9
CDH3-202ENST00000429102 RNASE3P12724 160 aaKnown RBP9.4□□□□□ -0.9
CDH3-202ENST00000429102 HERVK_113P61574 105 aa9.4□□□□□ -0.9
CDH3-202ENST00000429102 NEXN-AS1Q8NBZ9 246 aa9.4□□□□□ -0.9
CDH3-202ENST00000429102 P0DMU3 169 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 FAM231AP0DMU4 169 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 FAM231CP0DMU5 169 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 MORN3Q6PF18 240 aaPredicted RBP9.39□□□□□ -0.91
CDH3-202ENST00000429102 DLX4Q92988 240 aaPredicted RBP9.39□□□□□ -0.91
CDH3-202ENST00000429102 TRBV7-3A0A075B6L6 115 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 RBAKDNA6NC62 111 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 OOSP1A8MZH6 123 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 C9JAW5 83 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 KHDC1LQ5JSQ8 128 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 SUMO4Q6EEV6 95 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 COX8CQ7Z4L0 72 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 MRAP2Q96G30 205 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 GNLYP22749 145 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 TOMM6Q96B49 74 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 SPXQ9BT56 116 aa9.39□□□□□ -0.91
CDH3-202ENST00000429102 TSPEAR-AS2P59090 65 aa9.38□□□□□ -0.91
CDH3-202ENST00000429102 CHD6Q8TD26 2715 aa9.38□□□□□ -0.91
CDH3-202ENST00000429102 ACANP16112 2415 aa9.38□□□□□ -0.91
CDH3-202ENST00000429102 DUX3Q96PT4 197 aa9.38□□□□□ -0.91
CDH3-202ENST00000429102 ANKRD17O75179 2603 aaKnown RBP9.38□□□□□ -0.91
CDH3-202ENST00000429102 MXRA5Q9NR99 2828 aa9.38□□□□□ -0.91
CDH3-202ENST00000429102 TRBV20-1A0A075B6N2 111 aa9.37□□□□□ -0.91
CDH3-202ENST00000429102 PROK1P58294 105 aa9.37□□□□□ -0.91
CDH3-202ENST00000429102 TSPAN13O95857 204 aa9.37□□□□□ -0.91
CDH3-202ENST00000429102 ATP5J2P56134 94 aa9.37□□□□□ -0.91
CDH3-202ENST00000429102 TRPT1Q86TN4 253 aaKnown RBP9.37□□□□□ -0.91
CDH3-202ENST00000429102 A8MZ25 164 aa9.37□□□□□ -0.91
CDH3-202ENST00000429102 C3orf56Q8N813 242 aa9.37□□□□□ -0.91
CDH3-202ENST00000429102 OVOL1O14753 267 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 SYNJ2BPP57105 145 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 NFE4Q86UQ8 179 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 ZNF462Q96JM2 2506 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 TSHBP01222 138 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 CRYGDP07320 174 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 ZNF876PQ49A33 203 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 TEX15Q9BXT5 2789 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 IGHV3OR16-12A0A075B7B8 117 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 IGHV1-69DA0A0B4J2H0 117 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 IGHV3-38A0A0C4DH36 116 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 A0A0J9YXV3 536 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 IGHV1-69P01742 117 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 PSMG3-AS1Q96PY0 264 aa9.36□□□□□ -0.91
CDH3-202ENST00000429102 ZNRF2Q8NHG8 242 aa9.35□□□□□ -0.91
CDH3-202ENST00000429102 PIFOQ8TCI5 191 aa9.35□□□□□ -0.91
CDH3-202ENST00000429102 ZNF625Q96I27 306 aaPredicted RBP9.35□□□□□ -0.91
CDH3-202ENST00000429102 A8MWV9 139 aa9.35□□□□□ -0.91
CDH3-202ENST00000429102 ANAPC13Q9BS18 74 aa9.35□□□□□ -0.91
CDH3-202ENST00000429102 SS18L2Q9UHA2 77 aa9.35□□□□□ -0.91
CDH3-202ENST00000429102 IGHV3-16A0A0C4DH30 117 aa9.35□□□□□ -0.91
CDH3-202ENST00000429102 TCL1BO95988 128 aa9.35□□□□□ -0.91
CDH3-202ENST00000429102 FOXI1Q12951 378 aa9.35□□□□□ -0.91
CDH3-202ENST00000429102 DEFB136Q30KP8 78 aa9.35□□□□□ -0.91
CDH3-202ENST00000429102 Q9UF83 564 aa9.35□□□□□ -0.91
CDH3-202ENST00000429102 SMCPP49901 116 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms