RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 NIT2Q9NQR4 276 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 LHFPL6Q9Y693 200 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 KDM6AO15550 1401 aaPredicted RBP1.71□□□□□ -2.14
USP40-204ENST00000427947 DLG5Q8TDM6 1919 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 C4BP0C0L5 1744 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 KIAA1551Q9HCM1 1747 aa1.71□□□□□ -2.14
USP40-204ENST00000427947 WNK3Q9BYP7 1800 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 CCDC171Q6TFL3 1326 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 N4BP2Q86UW6 1770 aaPredicted RBP1.7□□□□□ -2.14
USP40-204ENST00000427947 TRBV7-6A0A0J9YX20 115 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 LYRM1O43325 122 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 ZNF846Q147U1 533 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 NUP210LQ5VU65 1888 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 CLECL1Q8IZS7 167 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 LINC00311Q8N616 119 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 RNASE11Q8TAA1 199 aaKnown RBP1.7□□□□□ -2.14
USP40-204ENST00000427947 TMEM254Q8TBM7 123 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 DOT1LQ8TEK3 1739 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 TTTY12Q9BZ98 90 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 TAF9BQ9HBM6 251 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 LRP1BQ9NZR2 4599 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 U3KQ87 197 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 DOCK4Q8N1I0 1966 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 LTN1O94822 1766 aa1.7□□□□□ -2.14
USP40-204ENST00000427947 UBR3Q6ZT12 1888 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 QSER1Q2KHR3 1735 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 SMG6Q86US8 1419 aaKnown RBP1.69□□□□□ -2.14
USP40-204ENST00000427947 TRAV14DV4A0A0A6YYC5 116 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 TRBV27A0A0K0K1C4 114 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 C17orf112F2Z3M2 114 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 LY6LH3BQJ8 138 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 J3QR89 54 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 OR1I1O60431 355 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 C1QCP02747 245 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 SCTP09683 121 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 TPT1P13693 172 aaKnown RBP1.69□□□□□ -2.14
USP40-204ENST00000427947 RPL22P35268 128 aaKnown RBP1.69□□□□□ -2.14
USP40-204ENST00000427947 TPRXLQ17RH7 258 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 HSD17B12Q53GQ0 312 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 C9orf163Q8N9P6 203 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 MCEEQ96PE7 176 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 KRTAP2-1Q9BYU5 128 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 BANF2Q9H503 90 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 PAIP2BQ9ULR5 123 aaKnown RBP1.69□□□□□ -2.14
USP40-204ENST00000427947 TPRKBQ9Y3C4 175 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 CMYA5Q8N3K9 4069 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 DENND4CQ5VZ89 1909 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 OBSL1O75147 1896 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 CPAMD8Q8IZJ3 1885 aa1.69□□□□□ -2.14
USP40-204ENST00000427947 DSPPQ9NZW4 1301 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 LTBP2Q14767 1821 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 TAF1LQ8IZX4 1826 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 C5P01031 1676 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 MEIKINA0A087WXM9 373 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 IGKV2D-26A0A0A0MRZ7 120 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.68□□□□□ -2.14
USP40-204ENST00000427947 K7ERU9 68 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 NDUFA2O43678 99 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 TCRAP04437 139 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 CD2P06729 351 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 MPC1LP0DKB6 136 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 MIFP14174 115 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 FABP4P15090 132 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 BRS3P32247 399 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 FOXA3P55318 350 aaPredicted RBP1.68□□□□□ -2.14
USP40-204ENST00000427947 MAXP61244 160 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 MRPS36P82909 103 aaKnown RBP1.68□□□□□ -2.14
USP40-204ENST00000427947 CDK6Q00534 326 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 DEFB113Q30KQ7 82 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 MORN2Q502X0 79 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 Q5XG85 94 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 LRRC18Q8N456 261 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 OR5A2Q8NGI9 324 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 RAB37Q96AX2 223 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 GGACTQ9BVM4 153 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 FKBP11Q9NYL4 201 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 OR5AC2Q9NZP5 309 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 RTL9Q8NET4 1388 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 MED23Q9ULK4 1368 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 C4AP0C0L4 1744 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 MYH7BA7E2Y1 1941 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 DNAH7Q8WXX0 4024 aa1.68□□□□□ -2.14
USP40-204ENST00000427947 SIPA1L3O60292 1781 aaPredicted RBP1.67□□□□□ -2.14
USP40-204ENST00000427947 hDV103S1A0JD37 113 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 CCDC160A6NGH7 325 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 B4DSR2 109 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 SMIM24O75264 130 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 CIRBPQ14011 172 aaKnown RBP1.67□□□□□ -2.14
USP40-204ENST00000427947 C1orf134Q5TEV5 83 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 MORN4Q8NDC4 146 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 SPACA4Q8TDM5 124 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 SFT2D1Q8WV19 159 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 MAGOHBQ96A72 148 aaKnown RBP1.67□□□□□ -2.14
USP40-204ENST00000427947 MUCL1Q96DR8 90 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 HYLS1Q96M11 299 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 OR4C12Q96R67 309 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 TNFSF18Q9UNG2 199 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 UBR2Q8IWV8 1755 aa1.67□□□□□ -2.14
USP40-204ENST00000427947 ZNF469Q96JG9 3925 aaPredicted RBP1.67□□□□□ -2.14
USP40-204ENST00000427947 SBF1O95248 1867 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms