RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PRR20CP86479 221 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 PRR20DP86480 221 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 PRR20BP86481 221 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 PRR20AP86496 221 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 COL4A1P02462 1669 aa5.38□□□□□ -1.55
SCN1A-204ENST00000423058 IGLC1P0CG04 106 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 NDUFA11Q86Y39 141 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 CENPVL3A0A0U1RRI6 287 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 PSMB8P28062 276 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 NFE4Q86UQ8 179 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 TMEM263Q8WUH6 116 aaKnown RBP5.37□□□□□ -1.55
SCN1A-204ENST00000423058 FXYD5Q96DB9 178 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 CYTL1Q9NRR1 136 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 IGF2-ASQ6U949 168 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 FGF23Q9GZV9 251 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-204ENST00000423058 A0A0B4J2C4 111 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-204ENST00000423058 ATOX1O00244 68 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 IGLC2P0DOY2 106 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 IGLC3P0DOY3 106 aa5.37□□□□□ -1.55
SCN1A-204ENST00000423058 SONP18583 2426 aaKnown RBP5.36□□□□□ -1.55
SCN1A-204ENST00000423058 GAGE12HA6NDE8 117 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 TEX22C9J3V5 150 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 DEFB135Q30KP9 77 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 NPYP01303 97 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 TRBV12-3P01733 135 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 SPAG11BQ08648 103 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 PRR31Q5SQ13 230 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 C2orf70A6NJV1 201 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 CFC1BP0CG36 223 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 CFC1P0CG37 223 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 IGHV4-30-2A0A087WSY4 118 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 A0A087WV48 116 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 WT1-ASQ06250 92 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 ODF3L1Q8IXM7 274 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 ZNF664Q8N3J9 261 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 RNF144BQ7Z419 303 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 ZNF491Q8N8L2 437 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 PTPN13Q12923 2485 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 C15orf65H3BRN8 121 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 NDUFS7O75251 213 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 C10orf91Q5T1B1 145 aa5.36□□□□□ -1.55
SCN1A-204ENST00000423058 CCL25O15444 150 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 SLX1AQ9BQ83 275 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 K7EP34 96 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 MAJINQ3KP22 176 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 K7EMT4 169 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 C5orf56Q8N8D9 126 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 Q6ZRM9 215 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 KLK12Q9UKR0 248 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 IGHV1-58A0A0C4DH39 117 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 TRBV10-2A0A0K0K1G8 114 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 V9GYV3 84 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 A0A0G2JRQ6 117 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 IGHV4-38-2P0DP08 117 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 UBE2D4Q9Y2X8 147 aa5.35□□□□□ -1.55
SCN1A-204ENST00000423058 SMIM9A6NGZ8 99 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 NCR3O14931 201 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 C16orf54Q6UWD8 224 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 Q6ZR03 302 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 TPSG1Q9NRR2 321 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 FHL1Q13642 323 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 DAZAP2Q15038 168 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-204ENST00000423058 UPK3BQ9BT76 320 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 PRO0255Q9UI72 69 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 CRIPAKQ8N1N5 446 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 LRCOL1A6NCL2 159 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 USP17L23D6RBM5 183 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 TMEM61Q8N0U2 210 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 CYYR1Q96J86 154 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 ZNF706Q9Y5V0 76 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-204ENST00000423058 IGHV4OR15-8A0A075B7B6 117 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 A0A087WW49 117 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 IGHV4-61A0A0C4DH41 118 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 C12orf74Q32Q52 190 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 C10orf105Q8TEF2 133 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 TECTAO75443 2155 aa5.34□□□□□ -1.55
SCN1A-204ENST00000423058 CRYGDP07320 174 aa5.34□□□□□ -1.56
SCN1A-204ENST00000423058 COX7BP24311 80 aa5.34□□□□□ -1.56
SCN1A-204ENST00000423058 WDR86Q86TI4 376 aa5.34□□□□□ -1.56
SCN1A-204ENST00000423058 IGKV1-6A0A0C4DH72 117 aa5.34□□□□□ -1.56
SCN1A-204ENST00000423058 A4D1N5 150 aa5.34□□□□□ -1.56
SCN1A-204ENST00000423058 K7EP13 123 aa5.33□□□□□ -1.56
SCN1A-204ENST00000423058 AJUBAQ96IF1 538 aa5.33□□□□□ -1.56
SCN1A-204ENST00000423058 LINC01548A6NM66 108 aa5.33□□□□□ -1.56
SCN1A-204ENST00000423058 H3BMG7 143 aa5.33□□□□□ -1.56
SCN1A-204ENST00000423058 FAM215AQ9Y5M1 114 aa5.33□□□□□ -1.56
SCN1A-204ENST00000423058 PRB1P04280 392 aa5.33□□□□□ -1.56
SCN1A-204ENST00000423058 SVIPQ8NHG7 77 aa5.33□□□□□ -1.56
SCN1A-204ENST00000423058 LYRM9A8MSI8 78 aa5.33□□□□□ -1.56
SCN1A-204ENST00000423058 A0A087WZ39 114 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 IGLC7A0M8Q6 106 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 MED14OSP0DP75 135 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 ETDBQ3ZM63 59 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 DUX4L9Q6RFH8 374 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-204ENST00000423058 CPAMD8Q8IZJ3 1885 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 ANKRD39Q53RE8 183 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 SHISA2Q6UWI4 295 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 KLHDC3Q9BQ90 382 aa5.32□□□□□ -1.56
SCN1A-204ENST00000423058 AGPAT4-IT1Q9H0P7 198 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms