RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 COA6Q5JTJ3 125 aaKnown RBP4.34□□□□□ -1.71
HMGB3-202ENST00000419110 PIK3CD-AS1Q5SR53 167 aa4.34□□□□□ -1.71
HMGB3-202ENST00000419110 FAM74A4Q5TZK3 123 aa4.34□□□□□ -1.71
HMGB3-202ENST00000419110 RNASEKQ6P5S7 137 aaKnown RBP4.34□□□□□ -1.71
HMGB3-202ENST00000419110 C18orf32Q8TCD1 76 aa4.34□□□□□ -1.71
HMGB3-202ENST00000419110 RNASE8Q8TDE3 154 aaKnown RBP4.34□□□□□ -1.71
HMGB3-202ENST00000419110 PRELID3AQ96N28 172 aa4.34□□□□□ -1.71
HMGB3-202ENST00000419110 ALKBH7Q9BT30 221 aaPredicted RBP4.34□□□□□ -1.71
HMGB3-202ENST00000419110 SAMD10Q9BYL1 202 aa4.34□□□□□ -1.71
HMGB3-202ENST00000419110 GSN-AS1Q9NRJ2 163 aa4.34□□□□□ -1.71
HMGB3-202ENST00000419110 TP53TG3Q9ULZ0 132 aa4.34□□□□□ -1.71
HMGB3-202ENST00000419110 TMEM238LA0A1B0GVL6 79 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 C5orf52A6NGY3 159 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 H7C1H1 209 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 HSBP1O75506 76 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 SERF1AO75920 110 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 IGHV4-30-4P0DP06 118 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 PMCHP20382 165 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 EVI2AP22794 236 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 AKR1D1P51857 326 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 SNRPEP62304 92 aaKnown RBP4.33□□□□□ -1.72
HMGB3-202ENST00000419110 Q0VG73 95 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 DEFB135Q30KP9 77 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 ZNF876PQ49A33 203 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 PDZD11Q5EBL8 140 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 ZNF705AQ6ZN79 300 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-202ENST00000419110 FA2HQ7L5A8 372 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 C1orf158Q8N1D5 194 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 C14orf178Q8N769 122 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-202ENST00000419110 C11orf72Q8NBR9 251 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 IL17DQ8TAD2 202 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 PTH2Q96A98 100 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 TMEM18Q96B42 140 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 MRPL16Q9NX20 251 aaKnown RBP4.33□□□□□ -1.72
HMGB3-202ENST00000419110 MSRB1Q9NZV6 116 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 MDFICQ9P1T7 246 aa4.33□□□□□ -1.72
HMGB3-202ENST00000419110 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.33□□□□□ -1.72
HMGB3-202ENST00000419110 TRGV1A0A0A0MS02 117 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 SMIM9A6NGZ8 99 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 F5H697 171 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 SMKR1H3BMG3 65 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 NPYP01303 97 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 GIG44P09565 113 aaPredicted RBP4.32□□□□□ -1.72
HMGB3-202ENST00000419110 RAB4AP20338 218 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 AMTP48728 403 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 IQCJQ1A5X6 159 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 HIST3H2BBQ8N257 126 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 CHCHD1Q96BP2 118 aaKnown RBP4.32□□□□□ -1.72
HMGB3-202ENST00000419110 RNF185Q96GF1 192 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 NXT2Q9NPJ8 142 aaKnown RBP4.32□□□□□ -1.72
HMGB3-202ENST00000419110 AP5S1Q9NUS5 200 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 U3KQK5 164 aa4.32□□□□□ -1.72
HMGB3-202ENST00000419110 FBN1P35555 2871 aaKnown RBP4.32□□□□□ -1.72
HMGB3-202ENST00000419110 A0A087WWL8 130 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 TRAV26-2A0A0B4J265 109 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 TRAV4A0A0B4J268 109 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 TEX48A0A1B0GUV7 120 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 G3V4G9 280 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 SPRY2O43597 315 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 TNFRSF6BO95407 300 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 ESDP10768 282 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 FABP4P15090 132 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 AZU1P20160 251 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 HOXA5P20719 270 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 LGALS9BQ3B8N2 356 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 SUMO4Q6EEV6 95 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 ZNF575Q86XF7 245 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 CSNK1G2-AS1Q8NCQ2 148 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 PRSS3P2Q8NHM4 247 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 PACRGQ96M98 296 aaPredicted RBP4.31□□□□□ -1.72
HMGB3-202ENST00000419110 SMIM2Q9BVW6 85 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 CMYA5Q8N3K9 4069 aa4.31□□□□□ -1.72
HMGB3-202ENST00000419110 TRGV2A0A075B6R0 118 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 LOC105371267A0A1B0GV96 52 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 A8MZ25 164 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 SMIM6P0DI80 62 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 MIFP14174 115 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 KRTAP10-11P60412 298 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 SUMO2P61956 95 aaKnown RBP4.3□□□□□ -1.72
HMGB3-202ENST00000419110 DAZ2Q13117 558 aaKnown RBP4.3□□□□□ -1.72
HMGB3-202ENST00000419110 ZFP2Q6ZN57 461 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 Q6ZWC4 215 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 POM121L12Q8N7R1 296 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 NRACQ8N912 160 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 OR4C5Q8NGB2 326 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 HIST1H2BLQ99880 126 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 C20orf78Q9BR46 151 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 EDA2RQ9HAV5 297 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 ST20Q9HBF5 79 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 NOP10Q9NPE3 64 aaKnown RBP4.3□□□□□ -1.72
HMGB3-202ENST00000419110 TP53TG1Q9Y2A0 90 aa4.3□□□□□ -1.72
HMGB3-202ENST00000419110 DNAH3Q8TD57 4116 aa4.29□□□□□ -1.72
HMGB3-202ENST00000419110 IGHV1-24A0A0C4DH33 117 aa4.29□□□□□ -1.72
HMGB3-202ENST00000419110 LOC389332A0A1B0GUA5 103 aa4.29□□□□□ -1.72
HMGB3-202ENST00000419110 LYRM9A8MSI8 78 aa4.29□□□□□ -1.72
HMGB3-202ENST00000419110 K7EMI3 77 aa4.29□□□□□ -1.72
HMGB3-202ENST00000419110 K7EQD1 137 aa4.29□□□□□ -1.72
HMGB3-202ENST00000419110 TCAPO15273 167 aa4.29□□□□□ -1.72
HMGB3-202ENST00000419110 RS1O15537 224 aa4.29□□□□□ -1.72
HMGB3-202ENST00000419110 CIDEAO60543 219 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms