RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 SSTP61278 116 aa8.64□□□□□ -1.03
SKA1-203ENST00000417656 RNF212Q495C1 297 aa8.64□□□□□ -1.03
SKA1-203ENST00000417656 CLLU1Q5K131 121 aa8.64□□□□□ -1.03
SKA1-203ENST00000417656 SPANXN1Q5VSR9 72 aa8.64□□□□□ -1.03
SKA1-203ENST00000417656 UFSP1Q6NVU6 142 aa8.64□□□□□ -1.03
SKA1-203ENST00000417656 SLC25A29Q8N8R3 303 aa8.64□□□□□ -1.03
SKA1-203ENST00000417656 SFRP2Q96HF1 295 aa8.64□□□□□ -1.03
SKA1-203ENST00000417656 RHODO00212 210 aa8.63□□□□□ -1.03
SKA1-203ENST00000417656 SRIP30626 198 aa8.63□□□□□ -1.03
SKA1-203ENST00000417656 RHOHQ15669 191 aa8.63□□□□□ -1.03
SKA1-203ENST00000417656 MRPL23Q16540 153 aaKnown RBP8.63□□□□□ -1.03
SKA1-203ENST00000417656 ESRGQ1W209 222 aa8.63□□□□□ -1.03
SKA1-203ENST00000417656 ZFP2Q6ZN57 461 aa8.63□□□□□ -1.03
SKA1-203ENST00000417656 Q6ZSN1 163 aa8.63□□□□□ -1.03
SKA1-203ENST00000417656 FAM231DQ6ZW35 169 aa8.63□□□□□ -1.03
SKA1-203ENST00000417656 SMDT1Q9H4I9 107 aa8.63□□□□□ -1.03
SKA1-203ENST00000417656 IGLV2-18A0A075B6J9 118 aa8.62□□□□□ -1.03
SKA1-203ENST00000417656 TRBV6-4A0A1B0GX49 114 aa8.62□□□□□ -1.03
SKA1-203ENST00000417656 GATCO43716 136 aaKnown RBP8.62□□□□□ -1.03
SKA1-203ENST00000417656 CRYGDP07320 174 aa8.62□□□□□ -1.03
SKA1-203ENST00000417656 CTRLP40313 264 aa8.62□□□□□ -1.03
SKA1-203ENST00000417656 ERVFC1-1P60608 527 aa8.62□□□□□ -1.03
SKA1-203ENST00000417656 FAM74A3Q4VXF1 159 aa8.62□□□□□ -1.03
SKA1-203ENST00000417656 PRADC1Q9BSG0 188 aa8.62□□□□□ -1.03
SKA1-203ENST00000417656 FAM3BP58499 235 aaPredicted RBP8.61□□□□□ -1.03
SKA1-203ENST00000417656 RPL23P62829 140 aaKnown RBP8.61□□□□□ -1.03
SKA1-203ENST00000417656 ADIRFQ15847 76 aa8.61□□□□□ -1.03
SKA1-203ENST00000417656 TMEM241Q24JQ0 296 aa8.61□□□□□ -1.03
SKA1-203ENST00000417656 LYZL1Q6UWQ5 148 aa8.61□□□□□ -1.03
SKA1-203ENST00000417656 NEGR1Q7Z3B1 354 aa8.61□□□□□ -1.03
SKA1-203ENST00000417656 C14orf178Q8N769 122 aaPredicted RBP8.61□□□□□ -1.03
SKA1-203ENST00000417656 ZNRF2Q8NHG8 242 aa8.61□□□□□ -1.03
SKA1-203ENST00000417656 AP1S3Q96PC3 154 aa8.61□□□□□ -1.03
SKA1-203ENST00000417656 NAT8Q9UHE5 227 aa8.61□□□□□ -1.03
SKA1-203ENST00000417656 MRPS16Q9Y3D3 137 aaKnown RBP8.61□□□□□ -1.03
SKA1-203ENST00000417656 A0A1W2PPQ1 181 aa8.6□□□□□ -1.03
SKA1-203ENST00000417656 M0R2N4 97 aa8.6□□□□□ -1.03
SKA1-203ENST00000417656 CACNG7P62955 275 aa8.6□□□□□ -1.03
SKA1-203ENST00000417656 ZNF56Q15929 161 aa8.6□□□□□ -1.03
SKA1-203ENST00000417656 SOHLH1Q5JUK2 328 aa8.6□□□□□ -1.03
SKA1-203ENST00000417656 GTSF1Q8WW33 167 aa8.6□□□□□ -1.03
SKA1-203ENST00000417656 ISOC2Q96AB3 205 aa8.6□□□□□ -1.03
SKA1-203ENST00000417656 MSRB1Q9NZV6 116 aa8.6□□□□□ -1.03
SKA1-203ENST00000417656 KMT2AQ03164 3969 aa8.6□□□□□ -1.03
SKA1-203ENST00000417656 GAGE12JA6NER3 117 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 F2Z2F3 143 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 GAGE1Q13065 139 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 GAGE4Q13068 117 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 GAGE5Q13069 117 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 GAGE13Q4V321 117 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 CT83Q5H943 113 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 LYPD5Q6UWN5 251 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 UPK3BQ9BT76 320 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 OSTCQ9NRP0 149 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 Q9UF83 564 aa8.59□□□□□ -1.03
SKA1-203ENST00000417656 A8MWL6 223 aa8.58□□□□□ -1.04
SKA1-203ENST00000417656 MGPP08493 103 aa8.58□□□□□ -1.04
SKA1-203ENST00000417656 LINC00694P0DN24 101 aa8.58□□□□□ -1.04
SKA1-203ENST00000417656 C15orf54Q8N8G6 183 aa8.58□□□□□ -1.04
SKA1-203ENST00000417656 SMIM17P0DL12 118 aa8.57□□□□□ -1.04
SKA1-203ENST00000417656 SH2D6Q7Z4S9 175 aa8.57□□□□□ -1.04
SKA1-203ENST00000417656 PGLYRP4Q96LB8 373 aa8.57□□□□□ -1.04
SKA1-203ENST00000417656 CNFNQ9BYD5 112 aa8.57□□□□□ -1.04
SKA1-203ENST00000417656 KIF25-AS1Q9Y6Z4 181 aa8.57□□□□□ -1.04
SKA1-203ENST00000417656 V9GYV3 84 aa8.57□□□□□ -1.04
SKA1-203ENST00000417656 F5H697 171 aa8.56□□□□□ -1.04
SKA1-203ENST00000417656 TRGC1P0CF51 173 aa8.56□□□□□ -1.04
SKA1-203ENST00000417656 NTF3P20783 257 aa8.56□□□□□ -1.04
SKA1-203ENST00000417656 EVI2AP22794 236 aa8.56□□□□□ -1.04
SKA1-203ENST00000417656 RAB4BP61018 213 aa8.56□□□□□ -1.04
SKA1-203ENST00000417656 Q6ZR54 194 aa8.56□□□□□ -1.04
SKA1-203ENST00000417656 OR10G8Q8NGN5 311 aa8.56□□□□□ -1.04
SKA1-203ENST00000417656 TSKUQ8WUA8 353 aa8.56□□□□□ -1.04
SKA1-203ENST00000417656 Q9H8V8 135 aa8.56□□□□□ -1.04
SKA1-203ENST00000417656 NBDYA0A0U1RRE5 68 aa8.55□□□□□ -1.04
SKA1-203ENST00000417656 HIGD1CA8MV81 97 aa8.55□□□□□ -1.04
SKA1-203ENST00000417656 LINC00315P59091 139 aa8.55□□□□□ -1.04
SKA1-203ENST00000417656 TWIST1Q15672 202 aa8.55□□□□□ -1.04
SKA1-203ENST00000417656 WDR73Q6P4I2 378 aa8.55□□□□□ -1.04
SKA1-203ENST00000417656 WFDC10BQ8IUB3 73 aa8.55□□□□□ -1.04
SKA1-203ENST00000417656 ATP6V0E2Q8NHE4 81 aa8.55□□□□□ -1.04
SKA1-203ENST00000417656 KRTAP4-8Q9BYQ9 185 aa8.55□□□□□ -1.04
SKA1-203ENST00000417656 TRBV10-1A0A0K0K1A3 114 aa8.54□□□□□ -1.04
SKA1-203ENST00000417656 SIVA1O15304 175 aa8.54□□□□□ -1.04
SKA1-203ENST00000417656 TIRAPP58753 221 aa8.54□□□□□ -1.04
SKA1-203ENST00000417656 SUMO4Q6EEV6 95 aa8.54□□□□□ -1.04
SKA1-203ENST00000417656 COMMD7Q86VX2 200 aa8.54□□□□□ -1.04
SKA1-203ENST00000417656 NEXN-AS1Q8NBZ9 246 aa8.54□□□□□ -1.04
SKA1-203ENST00000417656 KRTAP1-5Q9BYS1 174 aa8.54□□□□□ -1.04
SKA1-203ENST00000417656 GFRA4Q9GZZ7 299 aa8.54□□□□□ -1.04
SKA1-203ENST00000417656 DPH3P1Q9H4G8 78 aa8.54□□□□□ -1.04
SKA1-203ENST00000417656 DNAH10Q8IVF4 4471 aa8.53□□□□□ -1.04
SKA1-203ENST00000417656 RPL36AP83881 106 aaKnown RBP8.53□□□□□ -1.04
SKA1-203ENST00000417656 UQCC3Q6UW78 93 aa8.53□□□□□ -1.04
SKA1-203ENST00000417656 RPL36ALQ969Q0 106 aaKnown RBP8.53□□□□□ -1.04
SKA1-203ENST00000417656 BORCS7Q96B45 105 aa8.53□□□□□ -1.04
SKA1-203ENST00000417656 GTSF1LQ9H1H1 148 aa8.53□□□□□ -1.04
SKA1-203ENST00000417656 A0A1B0GUT8 65 aa8.52□□□□□ -1.05
SKA1-203ENST00000417656 FAM231BA6NCW3 169 aa8.52□□□□□ -1.05
SKA1-203ENST00000417656 ADCYAP1P18509 176 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms