RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 U3KQK5 164 aa4.79□□□□□ -1.64
VPS41-204ENST00000413141 X6R8D5 127 aa4.79□□□□□ -1.64
VPS41-204ENST00000413141 MUC4Q99102 2169 aa4.79□□□□□ -1.64
VPS41-204ENST00000413141 A0A087WWL8 130 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 TRAV26-2A0A0B4J265 109 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 SMIM9A6NGZ8 99 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 SMKR1H3BMG3 65 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 MGPP08493 103 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 SMIM17P0DL12 118 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 LORP23490 312 aaPredicted RBP4.78□□□□□ -1.64
VPS41-204ENST00000413141 NDUFA6P56556 154 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 LINC00315P59091 139 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 Q0VG73 95 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 DAZ2Q13117 558 aaKnown RBP4.78□□□□□ -1.64
VPS41-204ENST00000413141 IQCJQ1A5X6 159 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 OR10J3Q5JRS4 329 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 COA6Q5JTJ3 125 aaKnown RBP4.78□□□□□ -1.64
VPS41-204ENST00000413141 Q6ZWC4 215 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 ORMDL3Q8N138 153 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 POM121L12Q8N7R1 296 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 C18orf32Q8TCD1 76 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 RNF183Q96D59 192 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 MRAP2Q96G30 205 aa4.78□□□□□ -1.64
VPS41-204ENST00000413141 TRGV1A0A0A0MS02 117 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 C5orf52A6NGY3 159 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 A8MWV9 139 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 GAS8-AS1O95177 125 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 NPYP01303 97 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 PPBPP02775 128 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 PRB2P02812 416 aaPredicted RBP4.77□□□□□ -1.65
VPS41-204ENST00000413141 CRYGDP07320 174 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 CKS2P33552 79 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 LINC00310P59036 64 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 SNRPEP62304 92 aaKnown RBP4.77□□□□□ -1.65
VPS41-204ENST00000413141 ZNF56Q15929 161 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 LGALS9BQ3B8N2 356 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 FAM74A4Q5TZK3 123 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 UFSP1Q6NVU6 142 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 Q6ZTI0 123 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 OR11H2Q8NH07 326 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 RASL10AQ92737 203 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 PRELID3AQ96N28 172 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 SAMD10Q9BYL1 202 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 NOP10Q9NPE3 64 aaKnown RBP4.77□□□□□ -1.65
VPS41-204ENST00000413141 LAMTOR2Q9Y2Q5 125 aa4.77□□□□□ -1.65
VPS41-204ENST00000413141 DNHD1Q96M86 4753 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 IGHV4-28A0A0C4DH34 117 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 K7EIL1 84 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 RHODO00212 210 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 RS1O15537 224 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 SERF1AO75920 110 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 MIFP14174 115 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 GATA1P15976 413 aaPredicted RBP4.76□□□□□ -1.65
VPS41-204ENST00000413141 CFAP126Q5VTH2 177 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 SUMO4Q6EEV6 95 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 BAGE3Q86Y29 109 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 NRACQ8N912 160 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 Q8NAQ8 132 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 OVOL2Q9BRP0 275 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 TP53TG1Q9Y2A0 90 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 NBEAL1Q6ZS30 2694 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 MGAM2Q2M2H8 2515 aa4.76□□□□□ -1.65
VPS41-204ENST00000413141 NOTCH1P46531 2555 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 IGHV3-73A0A0B4J1V6 119 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 TRAV4A0A0B4J268 109 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 LOC105371267A0A1B0GV96 52 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 TNFRSF6BO95407 300 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 ESDP10768 282 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 HOXA5P20719 270 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 EMP1P54849 157 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 PDZD11Q5EBL8 140 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 ZFP2Q6ZN57 461 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 HIST3H2BBQ8N257 126 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 LINC00612Q8N6U2 182 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 RPL39LQ96EH5 51 aaKnown RBP4.75□□□□□ -1.65
VPS41-204ENST00000413141 URB1-AS1Q96HZ7 61 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 EDA2RQ9HAV5 297 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 RETNQ9HD89 108 aa4.75□□□□□ -1.65
VPS41-204ENST00000413141 TRGV2A0A075B6R0 118 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 GAGE12BA1L429 117 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 IFITM10A6NMD0 228 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 LYRM9A8MSI8 78 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 F5H697 171 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 M0QY20 66 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 NUPR1O60356 82 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 GAGE7O76087 117 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 PPP1R17O96001 155 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 GAGE12FP0CL80 117 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 GAGE12GP0CL81 117 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 GAGE12IP0CL82 117 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 RNASEKQ6P5S7 137 aaKnown RBP4.74□□□□□ -1.65
VPS41-204ENST00000413141 OR4C5Q8NGB2 326 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 CHCHD1Q96BP2 118 aaKnown RBP4.74□□□□□ -1.65
VPS41-204ENST00000413141 ZNF479Q96JC4 524 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 C18orf15Q96N68 181 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 MAP1LC3AQ9H492 121 aa4.74□□□□□ -1.65
VPS41-204ENST00000413141 NACAE9PAV3 2078 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 IGLV2-18A0A075B6J9 118 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 TRBV6-5A0A0K0K1A5 114 aa4.73□□□□□ -1.65
VPS41-204ENST00000413141 LOC389332A0A1B0GUA5 103 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms