RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 RAB5CP51148 216 aa12.83□□□□□ -0.36
SF3A1-202ENST00000411423 LELP1Q5T871 98 aa12.83□□□□□ -0.36
SF3A1-202ENST00000411423 FAM74A4Q5TZK3 123 aa12.83□□□□□ -0.36
SF3A1-202ENST00000411423 PRR27Q6MZM9 219 aa12.83□□□□□ -0.36
SF3A1-202ENST00000411423 SLC51BQ86UW2 128 aa12.83□□□□□ -0.36
SF3A1-202ENST00000411423 C9orf62Q8N4C0 152 aa12.83□□□□□ -0.36
SF3A1-202ENST00000411423 SYT8Q8NBV8 401 aa12.83□□□□□ -0.36
SF3A1-202ENST00000411423 GTSF1LQ9H1H1 148 aa12.83□□□□□ -0.36
SF3A1-202ENST00000411423 PHLDA3Q9Y5J5 127 aa12.83□□□□□ -0.36
SF3A1-202ENST00000411423 TRAV9-2A0A087WT02 112 aa12.82□□□□□ -0.36
SF3A1-202ENST00000411423 LINC01556Q5JQF7 62 aa12.82□□□□□ -0.36
SF3A1-202ENST00000411423 OR10J3Q5JRS4 329 aa12.82□□□□□ -0.36
SF3A1-202ENST00000411423 OR10AG1Q8NH19 301 aa12.82□□□□□ -0.36
SF3A1-202ENST00000411423 KRTAP4-5Q9BYR2 181 aa12.82□□□□□ -0.36
SF3A1-202ENST00000411423 MUC21A0A0G2JKD1 596 aa12.81□□□□□ -0.36
SF3A1-202ENST00000411423 MUC21A0A140T8X8 626 aa12.81□□□□□ -0.36
SF3A1-202ENST00000411423 RAB19A4D1S5 217 aa12.81□□□□□ -0.36
SF3A1-202ENST00000411423 SNAI2O43623 268 aa12.8□□□□□ -0.36
SF3A1-202ENST00000411423 IGHV3-30P01768 117 aa12.8□□□□□ -0.36
SF3A1-202ENST00000411423 IGHV3-33P01772 117 aa12.8□□□□□ -0.36
SF3A1-202ENST00000411423 CXCL1P09341 107 aa12.8□□□□□ -0.36
SF3A1-202ENST00000411423 IGHV3-30-3P0DP02 117 aa12.8□□□□□ -0.36
SF3A1-202ENST00000411423 IGHV3-30-5P0DP03 117 aa12.8□□□□□ -0.36
SF3A1-202ENST00000411423 CENPWQ5EE01 88 aa12.8□□□□□ -0.36
SF3A1-202ENST00000411423 EIF5AL1Q6IS14 154 aaKnown RBP12.8□□□□□ -0.36
SF3A1-202ENST00000411423 AKAP14Q86UN6 197 aa12.8□□□□□ -0.36
SF3A1-202ENST00000411423 ZFP82Q8N141 532 aa12.8□□□□□ -0.36
SF3A1-202ENST00000411423 TRBV20OR9-2A0A075B6H5 130 aa12.79□□□□□ -0.36
SF3A1-202ENST00000411423 A0A087WTM6 91 aa12.79□□□□□ -0.36
SF3A1-202ENST00000411423 TRAV8-6A0A0B4J262 113 aa12.79□□□□□ -0.36
SF3A1-202ENST00000411423 K7EP13 123 aa12.79□□□□□ -0.36
SF3A1-202ENST00000411423 RHODO00212 210 aa12.79□□□□□ -0.36
SF3A1-202ENST00000411423 NFE4Q86UQ8 179 aa12.79□□□□□ -0.36
SF3A1-202ENST00000411423 SSBP4Q9BWG4 385 aaPredicted RBP12.79□□□□□ -0.36
SF3A1-202ENST00000411423 IBA57-AS1B1ANH7 110 aa12.78□□□□□ -0.36
SF3A1-202ENST00000411423 A0A1B0GVG6 124 aa12.77□□□□□ -0.37
SF3A1-202ENST00000411423 CDK2AP2O75956 126 aa12.77□□□□□ -0.37
SF3A1-202ENST00000411423 GZMBP10144 247 aa12.77□□□□□ -0.37
SF3A1-202ENST00000411423 ERVFC1-1P60608 527 aa12.77□□□□□ -0.37
SF3A1-202ENST00000411423 MEF2BQ02080 365 aaPredicted RBP12.77□□□□□ -0.37
SF3A1-202ENST00000411423 C10orf126Q8N4M7 172 aa12.77□□□□□ -0.37
SF3A1-202ENST00000411423 C19orf71A6NCJ1 209 aa12.76□□□□□ -0.37
SF3A1-202ENST00000411423 BCL2P10415 239 aa12.76□□□□□ -0.37
SF3A1-202ENST00000411423 OR5AL1P0C617 328 aa12.75□□□□□ -0.37
SF3A1-202ENST00000411423 SSTP61278 116 aa12.75□□□□□ -0.37
SF3A1-202ENST00000411423 Q9HAA7 133 aa12.75□□□□□ -0.37
SF3A1-202ENST00000411423 LRCOL1A6NCL2 159 aa12.74□□□□□ -0.37
SF3A1-202ENST00000411423 RBFOX3A6NFN3 312 aa12.74□□□□□ -0.37
SF3A1-202ENST00000411423 TEX46H3BTG2 121 aa12.74□□□□□ -0.37
SF3A1-202ENST00000411423 ALKAL2Q6UX46 152 aa12.74□□□□□ -0.37
SF3A1-202ENST00000411423 KIF25-AS1Q9Y6Z4 181 aa12.74□□□□□ -0.37
SF3A1-202ENST00000411423 PDE6DO43924 150 aa12.73□□□□□ -0.37
SF3A1-202ENST00000411423 IGLC6P0CF74 106 aa12.73□□□□□ -0.37
SF3A1-202ENST00000411423 NKX2-5P52952 324 aaPredicted RBP12.73□□□□□ -0.37
SF3A1-202ENST00000411423 UBE2D3P61077 147 aa12.73□□□□□ -0.37
SF3A1-202ENST00000411423 UBE2D2P62837 147 aa12.73□□□□□ -0.37
SF3A1-202ENST00000411423 DAZ4Q86SG3 579 aaKnown RBP12.73□□□□□ -0.37
SF3A1-202ENST00000411423 DAZ3Q9NR90 486 aaKnown RBP12.73□□□□□ -0.37
SF3A1-202ENST00000411423 MED9Q9NWA0 146 aa12.73□□□□□ -0.37
SF3A1-202ENST00000411423 VAX2Q9UIW0 290 aa12.73□□□□□ -0.37
SF3A1-202ENST00000411423 IFNA1P01562 189 aa12.72□□□□□ -0.37
SF3A1-202ENST00000411423 GNG4P50150 75 aa12.72□□□□□ -0.37
SF3A1-202ENST00000411423 SPANXN1Q5VSR9 72 aa12.72□□□□□ -0.37
SF3A1-202ENST00000411423 DNAJC30Q96LL9 226 aa12.72□□□□□ -0.37
SF3A1-202ENST00000411423 PGPEP1Q9NXJ5 209 aa12.72□□□□□ -0.37
SF3A1-202ENST00000411423 BOLA1Q9Y3E2 137 aa12.72□□□□□ -0.37
SF3A1-202ENST00000411423 TRBV10-1A0A0K0K1A3 114 aa12.71□□□□□ -0.37
SF3A1-202ENST00000411423 RAB4BP61018 213 aa12.71□□□□□ -0.37
SF3A1-202ENST00000411423 ZNF56Q15929 161 aa12.71□□□□□ -0.37
SF3A1-202ENST00000411423 NEXN-AS1Q8NBZ9 246 aa12.71□□□□□ -0.37
SF3A1-202ENST00000411423 OR2D3Q8NGH3 330 aa12.71□□□□□ -0.37
SF3A1-202ENST00000411423 KRTAP10-1P60331 282 aa12.7□□□□□ -0.38
SF3A1-202ENST00000411423 WFDC2Q14508 124 aa12.7□□□□□ -0.38
SF3A1-202ENST00000411423 OR10G8Q8NGN5 311 aa12.7□□□□□ -0.38
SF3A1-202ENST00000411423 DNAH8Q96JB1 4490 aa12.7□□□□□ -0.38
SF3A1-202ENST00000411423 TRBV7-3A0A075B6L6 115 aa12.69□□□□□ -0.38
SF3A1-202ENST00000411423 K7EN84 100 aa12.69□□□□□ -0.38
SF3A1-202ENST00000411423 EREGO14944 169 aa12.69□□□□□ -0.38
SF3A1-202ENST00000411423 RPL36AP83881 106 aaKnown RBP12.69□□□□□ -0.38
SF3A1-202ENST00000411423 NIT1Q86X76 327 aa12.69□□□□□ -0.38
SF3A1-202ENST00000411423 MAPKAPK5-AS1Q8N8E1 139 aa12.69□□□□□ -0.38
SF3A1-202ENST00000411423 RPL36ALQ969Q0 106 aaKnown RBP12.69□□□□□ -0.38
SF3A1-202ENST00000411423 SMIM12Q96EX1 92 aa12.69□□□□□ -0.38
SF3A1-202ENST00000411423 FAT1Q14517 4588 aa12.68□□□□□ -0.38
SF3A1-202ENST00000411423 A0A087WWC5 75 aa12.68□□□□□ -0.38
SF3A1-202ENST00000411423 LAGE3Q14657 143 aa12.68□□□□□ -0.38
SF3A1-202ENST00000411423 FER1L6-AS1Q8NA97 138 aa12.68□□□□□ -0.38
SF3A1-202ENST00000411423 LYPD6BQ8NI32 183 aa12.68□□□□□ -0.38
SF3A1-202ENST00000411423 TPPP3Q9BW30 176 aa12.68□□□□□ -0.38
SF3A1-202ENST00000411423 CDPF1Q6NVV7 123 aa12.67□□□□□ -0.38
SF3A1-202ENST00000411423 NUDT10Q8NFP7 164 aa12.67□□□□□ -0.38
SF3A1-202ENST00000411423 DAZAP1Q96EP5 407 aaKnown RBP12.67□□□□□ -0.38
SF3A1-202ENST00000411423 NUDT11Q96G61 164 aa12.67□□□□□ -0.38
SF3A1-202ENST00000411423 PSCAO43653 123 aa12.66□□□□□ -0.38
SF3A1-202ENST00000411423 RPS20P60866 119 aaKnown RBP12.66□□□□□ -0.38
SF3A1-202ENST00000411423 OCC1Q8TAD7 63 aa12.66□□□□□ -0.38
SF3A1-202ENST00000411423 P01737 135 aa12.65□□□□□ -0.38
SF3A1-202ENST00000411423 XGP55808 180 aa12.65□□□□□ -0.38
SF3A1-202ENST00000411423 LYZL1Q6UWQ5 148 aa12.65□□□□□ -0.38
SF3A1-202ENST00000411423 AP1S3Q96PC3 154 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms