RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 SNAI2O43623 268 aa12.8□□□□□ -0.36
CKS1B-203ENST00000368439 EVI2AP22794 236 aa12.8□□□□□ -0.36
CKS1B-203ENST00000368439 CENPWQ5EE01 88 aa12.8□□□□□ -0.36
CKS1B-203ENST00000368439 LELP1Q5T871 98 aa12.8□□□□□ -0.36
CKS1B-203ENST00000368439 PRR27Q6MZM9 219 aa12.8□□□□□ -0.36
CKS1B-203ENST00000368439 SPATA12Q7Z6I5 190 aa12.8□□□□□ -0.36
CKS1B-203ENST00000368439 RAB19A4D1S5 217 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 GAGE12JA6NER3 117 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 BCL2P10415 239 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 KRTAP10-2P60368 255 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 GAGE1Q13065 139 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 GAGE4Q13068 117 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 GAGE5Q13069 117 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 GAGE13Q4V321 117 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 LINC01556Q5JQF7 62 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 OR10AG1Q8NH19 301 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 MSRB1Q9NZV6 116 aa12.79□□□□□ -0.36
CKS1B-203ENST00000368439 C16orf90A8MZG2 172 aa12.78□□□□□ -0.36
CKS1B-203ENST00000368439 FAM74A4Q5TZK3 123 aa12.78□□□□□ -0.36
CKS1B-203ENST00000368439 NFE4Q86UQ8 179 aa12.78□□□□□ -0.36
CKS1B-203ENST00000368439 TRBV20OR9-2A0A075B6H5 130 aa12.77□□□□□ -0.37
CKS1B-203ENST00000368439 TRAV8-6A0A0B4J262 113 aa12.77□□□□□ -0.37
CKS1B-203ENST00000368439 A0A1B0GVG6 124 aa12.77□□□□□ -0.37
CKS1B-203ENST00000368439 PDE6DO43924 150 aa12.77□□□□□ -0.37
CKS1B-203ENST00000368439 IFNA1P01562 189 aa12.77□□□□□ -0.37
CKS1B-203ENST00000368439 OR5AL1P0C617 328 aa12.77□□□□□ -0.37
CKS1B-203ENST00000368439 OR10J3Q5JRS4 329 aa12.77□□□□□ -0.37
CKS1B-203ENST00000368439 C10orf126Q8N4M7 172 aa12.77□□□□□ -0.37
CKS1B-203ENST00000368439 VAX2Q9UIW0 290 aa12.77□□□□□ -0.37
CKS1B-203ENST00000368439 PCLOQ9Y6V0 5065 aa12.76□□□□□ -0.37
CKS1B-203ENST00000368439 C19orf71A6NCJ1 209 aa12.76□□□□□ -0.37
CKS1B-203ENST00000368439 SMIM12Q96EX1 92 aa12.76□□□□□ -0.37
CKS1B-203ENST00000368439 MED9Q9NWA0 146 aa12.76□□□□□ -0.37
CKS1B-203ENST00000368439 ALKAL2Q6UX46 152 aa12.75□□□□□ -0.37
CKS1B-203ENST00000368439 MUC21A0A0G2JKD1 596 aa12.74□□□□□ -0.37
CKS1B-203ENST00000368439 MUC21A0A140T8X8 626 aa12.74□□□□□ -0.37
CKS1B-203ENST00000368439 IBA57-AS1B1ANH7 110 aa12.74□□□□□ -0.37
CKS1B-203ENST00000368439 GNG4P50150 75 aa12.74□□□□□ -0.37
CKS1B-203ENST00000368439 BOLA1Q9Y3E2 137 aa12.74□□□□□ -0.37
CKS1B-203ENST00000368439 IGLC6P0CF74 106 aa12.73□□□□□ -0.37
CKS1B-203ENST00000368439 TAGLN2P37802 199 aaKnown RBP12.73□□□□□ -0.37
CKS1B-203ENST00000368439 LYPD6BQ8NI32 183 aa12.73□□□□□ -0.37
CKS1B-203ENST00000368439 TRBV10-1A0A0K0K1A3 114 aa12.72□□□□□ -0.37
CKS1B-203ENST00000368439 IGHV3-30P01768 117 aa12.72□□□□□ -0.37
CKS1B-203ENST00000368439 IGHV3-33P01772 117 aa12.72□□□□□ -0.37
CKS1B-203ENST00000368439 IGHV3-30-3P0DP02 117 aa12.72□□□□□ -0.37
CKS1B-203ENST00000368439 IGHV3-30-5P0DP03 117 aa12.72□□□□□ -0.37
CKS1B-203ENST00000368439 GZMBP10144 247 aa12.72□□□□□ -0.37
CKS1B-203ENST00000368439 NKX2-5P52952 324 aaPredicted RBP12.72□□□□□ -0.37
CKS1B-203ENST00000368439 Q8N3U1 123 aa12.72□□□□□ -0.37
CKS1B-203ENST00000368439 KIF25-AS1Q9Y6Z4 181 aa12.72□□□□□ -0.37
CKS1B-203ENST00000368439 ABCA13Q86UQ4 5058 aa12.72□□□□□ -0.37
CKS1B-203ENST00000368439 A0A087WTM6 91 aa12.71□□□□□ -0.37
CKS1B-203ENST00000368439 ERVFC1-1P60608 527 aa12.71□□□□□ -0.37
CKS1B-203ENST00000368439 RAB4BP61018 213 aa12.71□□□□□ -0.37
CKS1B-203ENST00000368439 BLOC1S1P78537 153 aa12.71□□□□□ -0.37
CKS1B-203ENST00000368439 SPANXN1Q5VSR9 72 aa12.71□□□□□ -0.37
CKS1B-203ENST00000368439 OR10G8Q8NGN5 311 aa12.71□□□□□ -0.37
CKS1B-203ENST00000368439 CDK2AP2O75956 126 aa12.7□□□□□ -0.38
CKS1B-203ENST00000368439 UBE2D3P61077 147 aa12.7□□□□□ -0.38
CKS1B-203ENST00000368439 UBE2D2P62837 147 aa12.7□□□□□ -0.38
CKS1B-203ENST00000368439 OR2D3Q8NGH3 330 aa12.7□□□□□ -0.38
CKS1B-203ENST00000368439 DAZAP1Q96EP5 407 aaKnown RBP12.7□□□□□ -0.38
CKS1B-203ENST00000368439 KRTAP17-1Q9BYP8 105 aa12.7□□□□□ -0.38
CKS1B-203ENST00000368439 A0A087WWC5 75 aa12.69□□□□□ -0.38
CKS1B-203ENST00000368439 RBFOX3A6NFN3 312 aa12.69□□□□□ -0.38
CKS1B-203ENST00000368439 RPS20P60866 119 aaKnown RBP12.69□□□□□ -0.38
CKS1B-203ENST00000368439 TRBV7-3A0A075B6L6 115 aa12.68□□□□□ -0.38
CKS1B-203ENST00000368439 FUSP35637 526 aaKnown RBP eCLIP12.68□□□□□ -0.38
CKS1B-203ENST00000368439 SSTP61278 116 aa12.68□□□□□ -0.38
CKS1B-203ENST00000368439 RPL36AP83881 106 aaKnown RBP12.68□□□□□ -0.38
CKS1B-203ENST00000368439 ZNF56Q15929 161 aa12.68□□□□□ -0.38
CKS1B-203ENST00000368439 FER1L6-AS1Q8NA97 138 aa12.68□□□□□ -0.38
CKS1B-203ENST00000368439 NEXN-AS1Q8NBZ9 246 aa12.68□□□□□ -0.38
CKS1B-203ENST00000368439 RPL36ALQ969Q0 106 aaKnown RBP12.68□□□□□ -0.38
CKS1B-203ENST00000368439 LRCOL1A6NCL2 159 aa12.67□□□□□ -0.38
CKS1B-203ENST00000368439 K7EN84 100 aa12.67□□□□□ -0.38
CKS1B-203ENST00000368439 P01737 135 aa12.67□□□□□ -0.38
CKS1B-203ENST00000368439 LAGE3Q14657 143 aa12.67□□□□□ -0.38
CKS1B-203ENST00000368439 NUDT10Q8NFP7 164 aa12.67□□□□□ -0.38
CKS1B-203ENST00000368439 OCC1Q8TAD7 63 aa12.67□□□□□ -0.38
CKS1B-203ENST00000368439 NUDT11Q96G61 164 aa12.67□□□□□ -0.38
CKS1B-203ENST00000368439 BIN3Q9NQY0 253 aa12.67□□□□□ -0.38
CKS1B-203ENST00000368439 PGPEP1Q9NXJ5 209 aa12.67□□□□□ -0.38
CKS1B-203ENST00000368439 EREGO14944 169 aa12.66□□□□□ -0.38
CKS1B-203ENST00000368439 Q9HAA7 133 aa12.66□□□□□ -0.38
CKS1B-203ENST00000368439 TMEM250H0YL14 139 aa12.65□□□□□ -0.38
CKS1B-203ENST00000368439 DAZ4Q86SG3 579 aaKnown RBP12.65□□□□□ -0.38
CKS1B-203ENST00000368439 NIT1Q86X76 327 aa12.65□□□□□ -0.38
CKS1B-203ENST00000368439 AP1S3Q96PC3 154 aa12.65□□□□□ -0.38
CKS1B-203ENST00000368439 TPPP3Q9BW30 176 aa12.65□□□□□ -0.38
CKS1B-203ENST00000368439 DAZ3Q9NR90 486 aaKnown RBP12.65□□□□□ -0.38
CKS1B-203ENST00000368439 CACNG7P62955 275 aa12.64□□□□□ -0.39
CKS1B-203ENST00000368439 CDPF1Q6NVV7 123 aa12.64□□□□□ -0.39
CKS1B-203ENST00000368439 DNAH8Q96JB1 4490 aa12.63□□□□□ -0.39
CKS1B-203ENST00000368439 XKRY2A2RUG3 117 aa12.63□□□□□ -0.39
CKS1B-203ENST00000368439 F2Z2F3 143 aa12.63□□□□□ -0.39
CKS1B-203ENST00000368439 F5H697 171 aa12.63□□□□□ -0.39
CKS1B-203ENST00000368439 LYZL1Q6UWQ5 148 aa12.63□□□□□ -0.39
CKS1B-203ENST00000368439 RNASE7Q9H1E1 156 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms