RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 KLF12Q9Y4X4 402 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 INSL3P51460 131 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 DEFB125Q8N687 156 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 MAP6D1Q9H9H5 199 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 A0A0J9YX75 114 aa11.37□□□□□ -0.59
COL17A1-201ENST00000353479 PRSS29PA6NIE9 313 aa11.37□□□□□ -0.59
COL17A1-201ENST00000353479 DKK2Q9UBU2 259 aa11.37□□□□□ -0.59
COL17A1-201ENST00000353479 Q6ZSV7 163 aa11.37□□□□□ -0.59
COL17A1-201ENST00000353479 WNK1Q9H4A3 2382 aa11.37□□□□□ -0.59
COL17A1-201ENST00000353479 ATP6V0E2Q8NHE4 81 aa11.37□□□□□ -0.59
COL17A1-201ENST00000353479 ICOSQ9Y6W8 199 aa11.37□□□□□ -0.59
COL17A1-201ENST00000353479 H3BMM0 161 aa11.37□□□□□ -0.59
COL17A1-201ENST00000353479 MRPL23Q16540 153 aaKnown RBP11.37□□□□□ -0.59
COL17A1-201ENST00000353479 GTSF1Q8WW33 167 aa11.37□□□□□ -0.59
COL17A1-201ENST00000353479 UBE2WQ96B02 151 aa11.37□□□□□ -0.59
COL17A1-201ENST00000353479 C10orf99Q6UWK7 81 aa11.36□□□□□ -0.59
COL17A1-201ENST00000353479 ZNF503Q96F45 646 aa11.36□□□□□ -0.59
COL17A1-201ENST00000353479 NKAPP1Q8N9T2 125 aa11.36□□□□□ -0.59
COL17A1-201ENST00000353479 ZNF295-AS1Q8N0V1 137 aa11.35□□□□□ -0.59
COL17A1-201ENST00000353479 DNAJC30Q96LL9 226 aa11.35□□□□□ -0.59
COL17A1-201ENST00000353479 HIST2H2BDQ6DRA6 164 aa11.35□□□□□ -0.59
COL17A1-201ENST00000353479 TRAV8-3A0A0A6YYJ7 113 aa11.35□□□□□ -0.59
COL17A1-201ENST00000353479 CEP295Q9C0D2 2601 aa11.34□□□□□ -0.59
COL17A1-201ENST00000353479 NACAE9PAV3 2078 aa11.34□□□□□ -0.59
COL17A1-201ENST00000353479 IGLL1P15814 213 aa11.34□□□□□ -0.59
COL17A1-201ENST00000353479 NAV3Q8IVL0 2385 aa11.34□□□□□ -0.59
COL17A1-201ENST00000353479 EREGO14944 169 aa11.34□□□□□ -0.59
COL17A1-201ENST00000353479 KIAA1549Q9HCM3 1950 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 J3QQQ9 107 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 K7EMI3 77 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 LURAP1LQ8IV03 231 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 C20orf144Q9BQM9 153 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 MDFICQ9P1T7 246 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 ZNF747Q9BV97 191 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 TNCP24821 2201 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 TRAV8-4A0A0B4J246 113 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 F8WEM9 126 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 IGHV3-30P01768 117 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 IGHV3-33P01772 117 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 IGHV3-30-3P0DP02 117 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 IGHV3-30-5P0DP03 117 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 HHLA3Q9XRX5 114 aa11.33□□□□□ -0.6
COL17A1-201ENST00000353479 CCL18P55774 89 aa11.32□□□□□ -0.6
COL17A1-201ENST00000353479 C2orf82Q6UX34 121 aa11.32□□□□□ -0.6
COL17A1-201ENST00000353479 KRTAP10-9P60411 292 aa11.32□□□□□ -0.6
COL17A1-201ENST00000353479 IGLV10-54A0A075B6I4 117 aa11.32□□□□□ -0.6
COL17A1-201ENST00000353479 LGALS9O00182 355 aa11.32□□□□□ -0.6
COL17A1-201ENST00000353479 DAZ2Q13117 558 aaKnown RBP11.32□□□□□ -0.6
COL17A1-201ENST00000353479 DAZ4Q86SG3 579 aaKnown RBP11.32□□□□□ -0.6
COL17A1-201ENST00000353479 C5orf38Q86SI9 138 aa11.32□□□□□ -0.6
COL17A1-201ENST00000353479 C1orf43Q9BWL3 253 aa11.32□□□□□ -0.6
COL17A1-201ENST00000353479 DAZ3Q9NR90 486 aaKnown RBP11.32□□□□□ -0.6
COL17A1-201ENST00000353479 ZFP2Q6ZN57 461 aa11.31□□□□□ -0.6
COL17A1-201ENST00000353479 SPANXA1Q9NS26 97 aa11.31□□□□□ -0.6
COL17A1-201ENST00000353479 F8W735 103 aaPredicted RBP11.31□□□□□ -0.6
COL17A1-201ENST00000353479 PRRC2AP48634 2157 aaKnown RBP11.31□□□□□ -0.6
COL17A1-201ENST00000353479 UTRNP46939 3433 aa11.31□□□□□ -0.6
COL17A1-201ENST00000353479 IGLC3P0DOY3 106 aa11.31□□□□□ -0.6
COL17A1-201ENST00000353479 COX8AP10176 69 aa11.31□□□□□ -0.6
COL17A1-201ENST00000353479 ABCA2Q9BZC7 2435 aa11.31□□□□□ -0.6
COL17A1-201ENST00000353479 OVOL2Q9BRP0 275 aa11.3□□□□□ -0.6
COL17A1-201ENST00000353479 DEFB114Q30KQ6 69 aa11.3□□□□□ -0.6
COL17A1-201ENST00000353479 TRBV6-1A0A0K0K1D8 114 aa11.3□□□□□ -0.6
COL17A1-201ENST00000353479 AMTNQ6UX39 209 aa11.3□□□□□ -0.6
COL17A1-201ENST00000353479 TMEM263Q8WUH6 116 aaKnown RBP11.29□□□□□ -0.6
COL17A1-201ENST00000353479 TRBV7-3A0A075B6L6 115 aa11.29□□□□□ -0.6
COL17A1-201ENST00000353479 SH2D6Q7Z4S9 175 aa11.29□□□□□ -0.6
COL17A1-201ENST00000353479 ZNF702PQ9H963 129 aa11.29□□□□□ -0.6
COL17A1-201ENST00000353479 MED14OSP0DP75 135 aa11.29□□□□□ -0.6
COL17A1-201ENST00000353479 CTRLP40313 264 aa11.29□□□□□ -0.6
COL17A1-201ENST00000353479 MYO18BQ8IUG5 2567 aa11.29□□□□□ -0.6
COL17A1-201ENST00000353479 ZNF80P51504 273 aaPredicted RBP11.28□□□□□ -0.6
COL17A1-201ENST00000353479 EDA2RQ9HAV5 297 aa11.28□□□□□ -0.6
COL17A1-201ENST00000353479 K7EQG2 157 aa11.28□□□□□ -0.6
COL17A1-201ENST00000353479 Q8N6K4 173 aa11.28□□□□□ -0.6
COL17A1-201ENST00000353479 ANKRD11Q6UB99 2663 aaPredicted RBP11.27□□□□□ -0.6
COL17A1-201ENST00000353479 C9JAW5 83 aa11.27□□□□□ -0.61
COL17A1-201ENST00000353479 RPL39P62891 51 aaKnown RBP11.27□□□□□ -0.61
COL17A1-201ENST00000353479 ZFAND3Q9H8U3 227 aa11.27□□□□□ -0.61
COL17A1-201ENST00000353479 C19orf71A6NCJ1 209 aa11.27□□□□□ -0.61
COL17A1-201ENST00000353479 PSMG3-AS1Q96PY0 264 aa11.27□□□□□ -0.61
COL17A1-201ENST00000353479 Q9H8V8 135 aa11.27□□□□□ -0.61
COL17A1-201ENST00000353479 Q6ZS46 218 aa11.27□□□□□ -0.61
COL17A1-201ENST00000353479 C20orf173Q96LM9 149 aa11.27□□□□□ -0.61
COL17A1-201ENST00000353479 TP53TG3Q9ULZ0 132 aa11.27□□□□□ -0.61
COL17A1-201ENST00000353479 ARHGAP32A7KAX9 2087 aa11.27□□□□□ -0.61
COL17A1-201ENST00000353479 AVPP01185 164 aa11.26□□□□□ -0.61
COL17A1-201ENST00000353479 FRMD6-AS1P0C7T7 363 aa11.26□□□□□ -0.61
COL17A1-201ENST00000353479 SLC25A29Q8N8R3 303 aa11.26□□□□□ -0.61
COL17A1-201ENST00000353479 A0A1W2PPR1 153 aa11.26□□□□□ -0.61
COL17A1-201ENST00000353479 PLXNB1O43157 2135 aa11.26□□□□□ -0.61
COL17A1-201ENST00000353479 PSMB8P28062 276 aa11.26□□□□□ -0.61
COL17A1-201ENST00000353479 LINC00173Q6ZV60 143 aa11.26□□□□□ -0.61
COL17A1-201ENST00000353479 LINC01006Q8NI28 216 aa11.26□□□□□ -0.61
COL17A1-201ENST00000353479 A0A0J9YXV3 536 aa11.25□□□□□ -0.61
COL17A1-201ENST00000353479 ZNF124Q15973 351 aa11.25□□□□□ -0.61
COL17A1-201ENST00000353479 NUPR1O60356 82 aa11.25□□□□□ -0.61
COL17A1-201ENST00000353479 SMR3AQ99954 134 aa11.25□□□□□ -0.61
COL17A1-201ENST00000353479 MRPL52Q86TS9 123 aaKnown RBP11.24□□□□□ -0.61
COL17A1-201ENST00000353479 SCRT2Q9NQ03 307 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms