RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 NPBQ8NG41 125 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 C20orf173Q96LM9 149 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 RNASE1P07998 156 aaKnown RBP9.14□□□□□ -0.95
USP1-201ENST00000339950 LGALS9BQ3B8N2 356 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 LGALS9CQ6DKI2 356 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 RNF223E7ERA6 249 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 SUMO2P61956 95 aaKnown RBP9.14□□□□□ -0.95
USP1-201ENST00000339950 C12orf74Q32Q52 190 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 C2orf91Q6ZV80 131 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 ZNF625Q96I27 306 aaPredicted RBP9.14□□□□□ -0.95
USP1-201ENST00000339950 UBE2E2Q96LR5 201 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 HRNRQ86YZ3 2850 aaPredicted RBP9.14□□□□□ -0.95
USP1-201ENST00000339950 IGHV1-69DA0A0B4J2H0 117 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 IGHV1-69P01742 117 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 TP53TG1Q9Y2A0 90 aa9.14□□□□□ -0.95
USP1-201ENST00000339950 ID1P41134 155 aa9.13□□□□□ -0.95
USP1-201ENST00000339950 ZNF876PQ49A33 203 aa9.13□□□□□ -0.95
USP1-201ENST00000339950 CEND1Q8N111 149 aa9.13□□□□□ -0.95
USP1-201ENST00000339950 AJUBAQ96IF1 538 aa9.13□□□□□ -0.95
USP1-201ENST00000339950 A0A096LNJ9 63 aa9.13□□□□□ -0.95
USP1-201ENST00000339950 DUSP14O95147 198 aaKnown RBP9.13□□□□□ -0.95
USP1-201ENST00000339950 DYNLRB2Q8TF09 96 aa9.13□□□□□ -0.95
USP1-201ENST00000339950 LMO4P61968 165 aa9.12□□□□□ -0.95
USP1-201ENST00000339950 MAPKAPK5-AS1Q8N8E1 139 aa9.12□□□□□ -0.95
USP1-201ENST00000339950 LY6G5BQ8NDX9 201 aa9.12□□□□□ -0.95
USP1-201ENST00000339950 F8W1H4 67 aa9.12□□□□□ -0.95
USP1-201ENST00000339950 C10orf126Q8N4M7 172 aa9.12□□□□□ -0.95
USP1-201ENST00000339950 SIRPDQ9H106 197 aa9.12□□□□□ -0.95
USP1-201ENST00000339950 TRBV7-1A0A0A6YYK4 115 aa9.12□□□□□ -0.95
USP1-201ENST00000339950 PRSS29PA6NIE9 313 aa9.12□□□□□ -0.95
USP1-201ENST00000339950 MRAP2Q96G30 205 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 PRADC1Q9BSG0 188 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 SMIM20Q8N5G0 67 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 SPXQ9BT56 116 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 NBEAL2Q6ZNJ1 2754 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 NF1P21359 2839 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 IGLL5B9A064 214 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 FLNAP21333 2647 aaKnown RBP9.11□□□□□ -0.95
USP1-201ENST00000339950 ODF1Q14990 250 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 C5orf56Q8N8D9 126 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 Q8N8P6 123 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 SPAG8Q99932 426 aaPredicted RBP9.11□□□□□ -0.95
USP1-201ENST00000339950 SMIM2Q9BVW6 85 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 DPH3P1Q9H4G8 78 aa9.11□□□□□ -0.95
USP1-201ENST00000339950 INSL3P51460 131 aa9.1□□□□□ -0.95
USP1-201ENST00000339950 SNRPD3P62318 126 aaKnown RBP9.1□□□□□ -0.95
USP1-201ENST00000339950 RNF185Q96GF1 192 aa9.1□□□□□ -0.95
USP1-201ENST00000339950 TEX15Q9BXT5 2789 aa9.1□□□□□ -0.95
USP1-201ENST00000339950 ODF3BA8MYP8 253 aa9.1□□□□□ -0.95
USP1-201ENST00000339950 FGF6P10767 208 aa9.1□□□□□ -0.95
USP1-201ENST00000339950 C9orf139Q6ZV77 190 aa9.1□□□□□ -0.95
USP1-201ENST00000339950 USP24Q9UPU5 2620 aa9.1□□□□□ -0.95
USP1-201ENST00000339950 MRPS12O15235 138 aaKnown RBP9.1□□□□□ -0.95
USP1-201ENST00000339950 DEFB131AP59861 70 aa9.1□□□□□ -0.95
USP1-201ENST00000339950 FBN2P35556 2912 aa9.1□□□□□ -0.95
USP1-201ENST00000339950 SDHAF1A6NFY7 115 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 H7C1H1 209 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 RS1O15537 224 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 DEFB112Q30KQ8 113 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 BOD1L2Q8IYS8 172 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 ERG28Q9UKR5 140 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 CEMP1Q6PRD7 247 aaPredicted RBP9.09□□□□□ -0.95
USP1-201ENST00000339950 MDFICQ9P1T7 246 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 P0DMU3 169 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 FAM231AP0DMU4 169 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 FAM231CP0DMU5 169 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 CFHR3Q02985 330 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 FOXI2Q6ZQN5 318 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 ZFAND3Q9H8U3 227 aa9.09□□□□□ -0.95
USP1-201ENST00000339950 DAZ1Q9NQZ3 744 aaKnown RBP9.09□□□□□ -0.95
USP1-201ENST00000339950 IGHG4P01861 327 aa9.08□□□□□ -0.96
USP1-201ENST00000339950 LINC01587Q99440 93 aa9.08□□□□□ -0.96
USP1-201ENST00000339950 OOSP1A8MZH6 123 aa9.08□□□□□ -0.96
USP1-201ENST00000339950 MSMBP08118 114 aa9.08□□□□□ -0.96
USP1-201ENST00000339950 MEIG1Q5JSS6 88 aa9.08□□□□□ -0.96
USP1-201ENST00000339950 IGSF10Q6WRI0 2623 aa9.08□□□□□ -0.96
USP1-201ENST00000339950 IGLC6P0CF74 106 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 PLNP26678 52 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 HIST2H2BCQ6DN03 193 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 XCL2Q9UBD3 114 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 SCGB1A1P11684 91 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 ZNF493Q6ZR52 646 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 SMPXQ9UHP9 88 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 TRAV8-3A0A0A6YYJ7 113 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 TRAV8-4A0A0B4J246 113 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 ORMDL2Q53FV1 153 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 ITPR3Q14573 2671 aa9.07□□□□□ -0.96
USP1-201ENST00000339950 OVOL1O14753 267 aa9.06□□□□□ -0.96
USP1-201ENST00000339950 AVPP01185 164 aa9.06□□□□□ -0.96
USP1-201ENST00000339950 APRG1Q8IVJ8 170 aa9.06□□□□□ -0.96
USP1-201ENST00000339950 GATD1Q8NB37 220 aa9.06□□□□□ -0.96
USP1-201ENST00000339950 MUC4Q99102 2169 aa9.06□□□□□ -0.96
USP1-201ENST00000339950 CLPSL1A2RUU4 121 aa9.06□□□□□ -0.96
USP1-201ENST00000339950 TMEM262E9PQX1 116 aa9.06□□□□□ -0.96
USP1-201ENST00000339950 RRN3P1Q2M238 152 aa9.06□□□□□ -0.96
USP1-201ENST00000339950 MYMXA0A1B0GTQ4 84 aa9.05□□□□□ -0.96
USP1-201ENST00000339950 NTN5Q8WTR8 489 aaPredicted RBP9.05□□□□□ -0.96
USP1-201ENST00000339950 VCX2Q9H322 139 aa9.05□□□□□ -0.96
USP1-201ENST00000339950 C2orf82Q6UX34 121 aa9.05□□□□□ -0.96
USP1-201ENST00000339950 ZNF48Q96MX3 618 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms