RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 NCR3O14931 201 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 HEATR5AQ86XA9 2040 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 Q6ZR03 302 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 DEFB105AQ8NG35 78 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 LY6DQ14210 128 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 LINC00308Q8TCZ7 52 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 COL8A2P25067 703 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 BPESC1Q9GZL8 116 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 P0C879 139 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 BRD3OSQ6XYD6 125 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 LINC00173Q6ZV60 143 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 TPSG1Q9NRR2 321 aa4.25□□□□□ -1.73
PTPRB-202ENST00000334414 MDC1Q14676 2089 aaKnown RBP4.24□□□□□ -1.73
PTPRB-202ENST00000334414 WISP1O95388 367 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 MIFP14174 115 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 ASPHD1Q5U4P2 390 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 H0Y9J4 135 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 IGLV2-23P01705 113 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 CCL24O00175 119 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 CGB3P0DN86 165 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 ZMAT4Q9H898 229 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 TRAV7A0A075B6U4 112 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 CTSGP08311 255 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 C9orf66Q5T8R8 295 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 ZFAND2AQ8N6M9 145 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 K7EIM0 57 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 RPL39P62891 51 aaKnown RBP4.24□□□□□ -1.73
PTPRB-202ENST00000334414 MYO7AQ13402 2215 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 IGHV4-28A0A0C4DH34 117 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 LYNX1G3V0Z9 82 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 LYNX1P0DP58 116 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 GYPEP15421 78 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 LINC00205P59089 165 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 RNF185Q96GF1 192 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 DEFB104AQ8WTQ1 72 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 LINC00574Q9H8X3 128 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 LINC00694P0DN24 101 aa4.24□□□□□ -1.73
PTPRB-202ENST00000334414 GPHB5Q86YW7 130 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 VWCEQ96DN2 955 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 A0A0J9YY99 117 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 FSTL3O95633 263 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 PRB3Q04118 309 aaPredicted RBP4.23□□□□□ -1.73
PTPRB-202ENST00000334414 CCDC140Q96MF4 163 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 CSDC2Q9Y534 153 aaKnown RBP4.23□□□□□ -1.73
PTPRB-202ENST00000334414 IGHV3-33P01772 117 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 SPAG11BQ08648 103 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 MYO9BQ13459 2157 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 SPART-AS1P0CW21 52 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 INSL3P51460 131 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 CXCL6P80162 114 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 CFHR3Q02985 330 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 CCDC179H3BU77 68 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 C4orf48Q5BLP8 95 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 PLXND1Q9Y4D7 1925 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 MPDZO75970 2070 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 RETNQ9HD89 108 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 E7EQL1 145 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 LYPD6Q86Y78 171 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 COL4A6Q14031 1691 aa4.23□□□□□ -1.73
PTPRB-202ENST00000334414 MYOFQ9NZM1 2061 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 CCKP06307 115 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 IGKV1-17P01599 117 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 C17orf77Q96MU5 243 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 C2orf91Q6ZV80 131 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 TRBV10-3A0A0K0K1G6 114 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 G3V318 75 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 IGLV2-14P01704 120 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 DENND4CQ5VZ89 1909 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 PMAIP1Q13794 54 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 PRYO14603 147 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 CCL18P55774 89 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.22□□□□□ -1.73
PTPRB-202ENST00000334414 ANAPC1Q9H1A4 1944 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 PATE2Q6UY27 113 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 LOC107984640A0A0U1RRK4 108 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 EPOPA6NHQ4 379 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 GATA1P15976 413 aaPredicted RBP4.22□□□□□ -1.73
PTPRB-202ENST00000334414 XGP55808 180 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 WFDC11Q8NEX6 87 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 HHLA3Q9XRX5 114 aa4.22□□□□□ -1.73
PTPRB-202ENST00000334414 BCE1O60756 84 aa4.21□□□□□ -1.73
PTPRB-202ENST00000334414 F8WDY8 70 aa4.21□□□□□ -1.73
PTPRB-202ENST00000334414 CNFNQ9BYD5 112 aa4.21□□□□□ -1.73
PTPRB-202ENST00000334414 CGB7P0DN87 165 aa4.21□□□□□ -1.74
PTPRB-202ENST00000334414 Q8N9L7 120 aa4.21□□□□□ -1.74
PTPRB-202ENST00000334414 MRPS12O15235 138 aaKnown RBP4.21□□□□□ -1.74
PTPRB-202ENST00000334414 NRGNQ92686 78 aa4.21□□□□□ -1.74
PTPRB-202ENST00000334414 C5orf56Q8N8D9 126 aa4.21□□□□□ -1.74
PTPRB-202ENST00000334414 IGKV2D-26A0A0A0MRZ7 120 aa4.21□□□□□ -1.74
PTPRB-202ENST00000334414 IGHV7-81A0A0B4J1V7 117 aa4.21□□□□□ -1.74
PTPRB-202ENST00000334414 WT1P19544 449 aaPredicted RBP4.21□□□□□ -1.74
PTPRB-202ENST00000334414 RPL28P46779 137 aaKnown RBP4.21□□□□□ -1.74
PTPRB-202ENST00000334414 RPS28P62857 69 aaKnown RBP4.21□□□□□ -1.74
PTPRB-202ENST00000334414 RUSC1-AS1Q66K80 236 aa4.21□□□□□ -1.74
PTPRB-202ENST00000334414 MBD6Q96DN6 1003 aa4.21□□□□□ -1.74
PTPRB-202ENST00000334414 CLPSL2Q6UWE3 100 aa4.21□□□□□ -1.74
PTPRB-202ENST00000334414 PRSS33Q8NF86 280 aa4.21□□□□□ -1.74
PTPRB-202ENST00000334414 Q6ZQT7 251 aa4.2□□□□□ -1.74
PTPRB-202ENST00000334414 SEM1Q6ZVN7 128 aa4.2□□□□□ -1.74
PTPRB-202ENST00000334414 C5orf38Q86SI9 138 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms