RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 F2Z2F3 143 aa9.63□□□□□ -0.87
LIMS1-201ENST00000332345 SIVA1O15304 175 aa9.63□□□□□ -0.87
LIMS1-201ENST00000332345 NXPH4O95158 308 aa9.63□□□□□ -0.87
LIMS1-201ENST00000332345 CRYGDP07320 174 aa9.63□□□□□ -0.87
LIMS1-201ENST00000332345 FAM74A4Q5TZK3 123 aa9.63□□□□□ -0.87
LIMS1-201ENST00000332345 Q6ZSN1 163 aa9.63□□□□□ -0.87
LIMS1-201ENST00000332345 NUDT10Q8NFP7 164 aa9.63□□□□□ -0.87
LIMS1-201ENST00000332345 OR10AG1Q8NH19 301 aa9.63□□□□□ -0.87
LIMS1-201ENST00000332345 NUDT11Q96G61 164 aa9.63□□□□□ -0.87
LIMS1-201ENST00000332345 FRAS1Q86XX4 4008 aa9.63□□□□□ -0.87
LIMS1-201ENST00000332345 A0A1W2PPQ1 181 aa9.62□□□□□ -0.87
LIMS1-201ENST00000332345 GZMBP10144 247 aa9.62□□□□□ -0.87
LIMS1-201ENST00000332345 TIRAPP58753 221 aa9.62□□□□□ -0.87
LIMS1-201ENST00000332345 SSTP61278 116 aa9.62□□□□□ -0.87
LIMS1-201ENST00000332345 FER1L6-AS1Q8NA97 138 aa9.62□□□□□ -0.87
LIMS1-201ENST00000332345 TPPP3Q9BW30 176 aa9.62□□□□□ -0.87
LIMS1-201ENST00000332345 LY96Q9Y6Y9 160 aa9.62□□□□□ -0.87
LIMS1-201ENST00000332345 DNAH10Q8IVF4 4471 aa9.62□□□□□ -0.87
LIMS1-201ENST00000332345 TRAV9-2A0A087WT02 112 aa9.61□□□□□ -0.87
LIMS1-201ENST00000332345 MUC21A0A0G2JKD1 596 aa9.61□□□□□ -0.87
LIMS1-201ENST00000332345 MUC21A0A140T8X8 626 aa9.61□□□□□ -0.87
LIMS1-201ENST00000332345 K7EN84 100 aa9.61□□□□□ -0.87
LIMS1-201ENST00000332345 SRP19P09132 144 aaKnown RBP9.61□□□□□ -0.87
LIMS1-201ENST00000332345 SMIM17P0DL12 118 aa9.61□□□□□ -0.87
LIMS1-201ENST00000332345 CACNG7P62955 275 aa9.61□□□□□ -0.87
LIMS1-201ENST00000332345 PEA15Q15121 130 aa9.61□□□□□ -0.87
LIMS1-201ENST00000332345 ATP6V0E2Q8NHE4 81 aa9.61□□□□□ -0.87
LIMS1-201ENST00000332345 SMIM7Q9BQ49 75 aa9.61□□□□□ -0.87
LIMS1-201ENST00000332345 RNASE7Q9H1E1 156 aaKnown RBP9.61□□□□□ -0.87
LIMS1-201ENST00000332345 ZNF727A8MUV8 499 aa9.6□□□□□ -0.87
LIMS1-201ENST00000332345 RTL8CO15255 209 aa9.6□□□□□ -0.87
LIMS1-201ENST00000332345 IGLC6P0CF74 106 aa9.6□□□□□ -0.87
LIMS1-201ENST00000332345 RAB4BP61018 213 aa9.6□□□□□ -0.87
LIMS1-201ENST00000332345 C6orf223Q8N319 242 aa9.6□□□□□ -0.87
LIMS1-201ENST00000332345 C14orf178Q8N769 122 aaPredicted RBP9.6□□□□□ -0.87
LIMS1-201ENST00000332345 GTSF1LQ9H1H1 148 aa9.6□□□□□ -0.87
LIMS1-201ENST00000332345 SMDT1Q9H4I9 107 aa9.6□□□□□ -0.87
LIMS1-201ENST00000332345 RPP21Q9H633 154 aaKnown RBP9.6□□□□□ -0.87
LIMS1-201ENST00000332345 DNAH2Q9P225 4427 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 TRAV8-6A0A0B4J262 113 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 TRBV10-1A0A0K0K1A3 114 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 GAGE12JA6NER3 117 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 A6NJY4 79 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 BTF3P20290 206 aaKnown RBP9.59□□□□□ -0.87
LIMS1-201ENST00000332345 GAGE1Q13065 139 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 GAGE4Q13068 117 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 GAGE5Q13069 117 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 GAGE13Q4V321 117 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 FAM74A3Q4VXF1 159 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 WDR73Q6P4I2 378 aa9.59□□□□□ -0.87
LIMS1-201ENST00000332345 PRSS29PA6NIE9 313 aa9.58□□□□□ -0.88
LIMS1-201ENST00000332345 F5H697 171 aa9.58□□□□□ -0.88
LIMS1-201ENST00000332345 K7EP13 123 aa9.58□□□□□ -0.88
LIMS1-201ENST00000332345 GATCO43716 136 aaKnown RBP9.58□□□□□ -0.88
LIMS1-201ENST00000332345 ERVFC1-1P60608 527 aa9.58□□□□□ -0.88
LIMS1-201ENST00000332345 RAB14P61106 215 aa9.58□□□□□ -0.88
LIMS1-201ENST00000332345 ZNF56Q15929 161 aa9.58□□□□□ -0.88
LIMS1-201ENST00000332345 LYZL1Q6UWQ5 148 aa9.58□□□□□ -0.88
LIMS1-201ENST00000332345 FAM231DQ6ZW35 169 aa9.58□□□□□ -0.88
LIMS1-201ENST00000332345 AP1S3Q96PC3 154 aa9.58□□□□□ -0.88
LIMS1-201ENST00000332345 EPPK1P58107 5090 aaKnown RBP9.57□□□□□ -0.88
LIMS1-201ENST00000332345 A8MWL6 223 aa9.57□□□□□ -0.88
LIMS1-201ENST00000332345 EVI2AP22794 236 aa9.57□□□□□ -0.88
LIMS1-201ENST00000332345 RPL36AP83881 106 aaKnown RBP9.57□□□□□ -0.88
LIMS1-201ENST00000332345 TMEM241Q24JQ0 296 aa9.57□□□□□ -0.88
LIMS1-201ENST00000332345 OR10J3Q5JRS4 329 aa9.57□□□□□ -0.88
LIMS1-201ENST00000332345 LELP1Q5T871 98 aa9.57□□□□□ -0.88
LIMS1-201ENST00000332345 RPL36ALQ969Q0 106 aaKnown RBP9.57□□□□□ -0.88
LIMS1-201ENST00000332345 A0A087WWC5 75 aa9.56□□□□□ -0.88
LIMS1-201ENST00000332345 TRGC1P0CF51 173 aa9.56□□□□□ -0.88
LIMS1-201ENST00000332345 NTF3P20783 257 aa9.56□□□□□ -0.88
LIMS1-201ENST00000332345 LINC01551Q86U37 167 aa9.56□□□□□ -0.88
LIMS1-201ENST00000332345 WFDC10BQ8IUB3 73 aa9.56□□□□□ -0.88
LIMS1-201ENST00000332345 Q9UF83 564 aa9.56□□□□□ -0.88
LIMS1-201ENST00000332345 TRBV7-3A0A075B6L6 115 aa9.55□□□□□ -0.88
LIMS1-201ENST00000332345 IGHV3-38A0A0C4DH36 116 aa9.55□□□□□ -0.88
LIMS1-201ENST00000332345 DNAH10OSP0CZ25 163 aa9.55□□□□□ -0.88
LIMS1-201ENST00000332345 LINC00694P0DN24 101 aa9.55□□□□□ -0.88
LIMS1-201ENST00000332345 CT83Q5H943 113 aa9.55□□□□□ -0.88
LIMS1-201ENST00000332345 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.55□□□□□ -0.88
LIMS1-201ENST00000332345 KRTAP1-5Q9BYS1 174 aa9.55□□□□□ -0.88
LIMS1-201ENST00000332345 MSRB1Q9NZV6 116 aa9.55□□□□□ -0.88
LIMS1-201ENST00000332345 KIF25-AS1Q9Y6Z4 181 aa9.55□□□□□ -0.88
LIMS1-201ENST00000332345 C9JQL5 133 aa9.54□□□□□ -0.88
LIMS1-201ENST00000332345 CTRLP40313 264 aa9.54□□□□□ -0.88
LIMS1-201ENST00000332345 SRSF3P84103 164 aaKnown RBP9.54□□□□□ -0.88
LIMS1-201ENST00000332345 TWIST1Q15672 202 aa9.54□□□□□ -0.88
LIMS1-201ENST00000332345 C10orf126Q8N4M7 172 aa9.54□□□□□ -0.88
LIMS1-201ENST00000332345 C15orf54Q8N8G6 183 aa9.54□□□□□ -0.88
LIMS1-201ENST00000332345 OR10G8Q8NGN5 311 aa9.54□□□□□ -0.88
LIMS1-201ENST00000332345 OSTCQ9NRP0 149 aa9.54□□□□□ -0.88
LIMS1-201ENST00000332345 DNAH17Q9UFH2 4485 aa9.54□□□□□ -0.88
LIMS1-201ENST00000332345 H7C1H1 209 aa9.53□□□□□ -0.88
LIMS1-201ENST00000332345 FOXA3P55318 350 aaPredicted RBP9.53□□□□□ -0.88
LIMS1-201ENST00000332345 LINC00315P59091 139 aa9.53□□□□□ -0.88
LIMS1-201ENST00000332345 NFE4Q86UQ8 179 aa9.53□□□□□ -0.88
LIMS1-201ENST00000332345 CNFNQ9BYD5 112 aa9.53□□□□□ -0.88
LIMS1-201ENST00000332345 NAT8Q9UHE5 227 aa9.53□□□□□ -0.88
LIMS1-201ENST00000332345 MGPP08493 103 aa9.52□□□□□ -0.89
LIMS1-201ENST00000332345 UBE2D3P61077 147 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms