RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 B3GALT5-AS1P59052 145 aa11.25□□□□□ -0.61
COL7A1-201ENST00000328333 UPK3BQ9BT76 320 aa11.25□□□□□ -0.61
COL7A1-201ENST00000328333 C16orf74Q96GX8 76 aa11.25□□□□□ -0.61
COL7A1-201ENST00000328333 USP9YO00507 2555 aaPredicted RBP11.25□□□□□ -0.61
COL7A1-201ENST00000328333 C15orf65H3BRN8 121 aa11.25□□□□□ -0.61
COL7A1-201ENST00000328333 NDUFA11Q86Y39 141 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 FXYD2P54710 66 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 Q8NFD4 153 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 ELANEP08246 267 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 C17orf82Q86X59 251 aaPredicted RBP11.24□□□□□ -0.61
COL7A1-201ENST00000328333 TRBV7-3A0A075B6L6 115 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 DEFB104AQ8WTQ1 72 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 TRAV4A0A0B4J268 109 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 K7EQD1 137 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 TRBV6-1A0A0K0K1D8 114 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 JMJD1CQ15652 2540 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 MSMBP08118 114 aa11.24□□□□□ -0.61
COL7A1-201ENST00000328333 MRPS36P82909 103 aaKnown RBP11.24□□□□□ -0.61
COL7A1-201ENST00000328333 IGKV3D-7A0A0C4DH55 119 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 A0A0G2JNJ9 132 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 NDUFA7O95182 113 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 Q9UFV3 132 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 WFDC2Q14508 124 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 HIST2H2BCQ6DN03 193 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 FHL1Q13642 323 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 IGFL4Q6B9Z1 124 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 COL4A5P29400 1685 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 C20orf173Q96LM9 149 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 IGF2BP2-AS1Q96M15 143 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 U3KQE9 123 aa11.23□□□□□ -0.61
COL7A1-201ENST00000328333 LYNX1G3V0Z9 82 aa11.22□□□□□ -0.61
COL7A1-201ENST00000328333 LYNX1P0DP58 116 aa11.22□□□□□ -0.61
COL7A1-201ENST00000328333 ODF1Q14990 250 aa11.22□□□□□ -0.61
COL7A1-201ENST00000328333 C17orf58Q2M2W7 97 aa11.22□□□□□ -0.61
COL7A1-201ENST00000328333 IGHV3-16A0A0C4DH30 117 aa11.22□□□□□ -0.61
COL7A1-201ENST00000328333 FLG2Q5D862 2391 aaPredicted RBP11.22□□□□□ -0.61
COL7A1-201ENST00000328333 PINLYPA6NC86 204 aa11.21□□□□□ -0.61
COL7A1-201ENST00000328333 GP9P14770 177 aa11.21□□□□□ -0.61
COL7A1-201ENST00000328333 FANCD2OSQ96PS1 177 aa11.21□□□□□ -0.62
COL7A1-201ENST00000328333 NDUFA1O15239 70 aa11.2□□□□□ -0.62
COL7A1-201ENST00000328333 ZNF491Q8N8L2 437 aa11.2□□□□□ -0.62
COL7A1-201ENST00000328333 BUB3O43684 328 aa11.2□□□□□ -0.62
COL7A1-201ENST00000328333 MIAQ16674 131 aa11.2□□□□□ -0.62
COL7A1-201ENST00000328333 BRD3OSQ6XYD6 125 aa11.2□□□□□ -0.62
COL7A1-201ENST00000328333 IGKV1-39P01597 117 aa11.2□□□□□ -0.62
COL7A1-201ENST00000328333 IGKV1D-39P04432 117 aa11.2□□□□□ -0.62
COL7A1-201ENST00000328333 LHBP01229 141 aa11.2□□□□□ -0.62
COL7A1-201ENST00000328333 TIRAPP58753 221 aa11.2□□□□□ -0.62
COL7A1-201ENST00000328333 THSD7BQ9C0I4 1608 aa11.19□□□□□ -0.62
COL7A1-201ENST00000328333 CRIPAKQ8N1N5 446 aa11.19□□□□□ -0.62
COL7A1-201ENST00000328333 CGB3P0DN86 165 aa11.19□□□□□ -0.62
COL7A1-201ENST00000328333 DKK4Q9UBT3 224 aa11.19□□□□□ -0.62
COL7A1-201ENST00000328333 SPTSSBQ8NFR3 76 aa11.19□□□□□ -0.62
COL7A1-201ENST00000328333 DIRC1Q969H9 104 aa11.19□□□□□ -0.62
COL7A1-201ENST00000328333 IGF2RP11717 2491 aa11.19□□□□□ -0.62
COL7A1-201ENST00000328333 ZNF503Q96F45 646 aa11.19□□□□□ -0.62
COL7A1-201ENST00000328333 IGLV3-1P01715 115 aa11.18□□□□□ -0.62
COL7A1-201ENST00000328333 CGB7P0DN87 165 aa11.18□□□□□ -0.62
COL7A1-201ENST00000328333 UBE2AP49459 152 aa11.18□□□□□ -0.62
COL7A1-201ENST00000328333 PRB4P10163 310 aaPredicted RBP11.18□□□□□ -0.62
COL7A1-201ENST00000328333 RS1O15537 224 aa11.18□□□□□ -0.62
COL7A1-201ENST00000328333 TRAV12-2A0A075B6T6 113 aa11.18□□□□□ -0.62
COL7A1-201ENST00000328333 A0A0J9YXY3 114 aa11.18□□□□□ -0.62
COL7A1-201ENST00000328333 FGF23Q9GZV9 251 aaPredicted RBP11.18□□□□□ -0.62
COL7A1-201ENST00000328333 ANKRD39Q53RE8 183 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 CAMK2N2Q96S95 79 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 C16orf54Q6UWD8 224 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 KIR2DL5BQ8NHK3 375 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 BPESC1Q9GZL8 116 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 HIST2H2BDQ6DRA6 164 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 C9orf47Q6ZRZ4 202 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 P0DMU3 169 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 FAM231AP0DMU4 169 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 FAM231CP0DMU5 169 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 TM2D2Q9BX73 214 aa11.17□□□□□ -0.62
COL7A1-201ENST00000328333 RPL18AQ02543 176 aaKnown RBP11.16□□□□□ -0.62
COL7A1-201ENST00000328333 IGHV3-38A0A0C4DH36 116 aa11.16□□□□□ -0.62
COL7A1-201ENST00000328333 USP17L23D6RBM5 183 aa11.16□□□□□ -0.62
COL7A1-201ENST00000328333 LECT2O14960 151 aa11.16□□□□□ -0.62
COL7A1-201ENST00000328333 MLANAQ16655 118 aa11.16□□□□□ -0.62
COL7A1-201ENST00000328333 LYPD2Q6UXB3 125 aa11.16□□□□□ -0.62
COL7A1-201ENST00000328333 WIPF3A6NGB9 483 aa11.16□□□□□ -0.62
COL7A1-201ENST00000328333 TDRG1Q3Y452 100 aa11.16□□□□□ -0.62
COL7A1-201ENST00000328333 PTH2Q96A98 100 aa11.16□□□□□ -0.62
COL7A1-201ENST00000328333 CDPF1Q6NVV7 123 aa11.16□□□□□ -0.62
COL7A1-201ENST00000328333 ZNF581Q9P0T4 197 aa11.16□□□□□ -0.62
COL7A1-201ENST00000328333 Q6ZS92 163 aa11.15□□□□□ -0.62
COL7A1-201ENST00000328333 MDFICQ9P1T7 246 aa11.15□□□□□ -0.62
COL7A1-201ENST00000328333 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.15□□□□□ -0.62
COL7A1-201ENST00000328333 IGKV2-29A2NJV5 120 aaPredicted RBP11.15□□□□□ -0.62
COL7A1-201ENST00000328333 EPOPA6NHQ4 379 aa11.15□□□□□ -0.62
COL7A1-201ENST00000328333 NPBQ8NG41 125 aa11.15□□□□□ -0.62
COL7A1-201ENST00000328333 TEX22C9J3V5 150 aa11.15□□□□□ -0.63
COL7A1-201ENST00000328333 TCL1BO95988 128 aa11.15□□□□□ -0.63
COL7A1-201ENST00000328333 BPY2O14599 106 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 DEFB105AQ8NG35 78 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 LINC00205P59089 165 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 CFHR3Q02985 330 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 AGPAT4-IT1Q9H0P7 198 aa11.14□□□□□ -0.63
COL7A1-201ENST00000328333 NOP10Q9NPE3 64 aaKnown RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms